Newt-omics
General Information
A comprehensive repository for omics data from the red spotted newt Notophthalmus viridescens from high throughput experiments. Newt-Omics aims to provide a comprehensive platform of expressed genes during tissue regeneration, including extensive annotations, expression data and experimentally verified peptide sequences with yet no homology to other publically available gene sequences. The goal is to obtain a detailed understanding of the molecular processes underlying tissue regeneration in the newt,that may lead to the development of approaches, efficiently stimulating regenerative pathways in mammalians.
How to cite this record
FAIRsharing.org: Newt-omics; Newt-omics; DOI: https://doi.org/10.25504/FAIRsharing.k6a8e5;
Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Sep 19 2019 4:17 p.m.
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Edits to 'https://fairsharing.org/FAIRsharing.k6a8e5' by 'The FAIRsharing Team' at 11:58, 21 Nov 2018 (not approved):
'domains' has been modified:
Before:
Annotation
Complementary DNA (cDNA)
DNA sequencing
Gene Ontology (GO) enrichment
Life Science
Peptide
Protein identification
After:
Annotation
Complementary DNA (cDNA)
DNA sequencing
Gene Ontology (GO) enrichment
Life Science
Peptide
Protein identification
Transcript
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Transcript
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'contact' has been modified:
Before: Thomas Braun
After: Thomas Braun
'description' has been modified:
Before: A comprehensive repository for omics data from the red spotted newt Notophthalmus viridescens from high throughput experiments. Newt-Omics aims to provide a comprehensive platform of expressed genes during tissue regeneration, including extensive annotations, expression data and experimentally verified peptide sequences with yet no homology to other publically available gene sequences. The goal is to obtain a detailed understanding of the molecular processes underlying tissue regeneration in the newt,that may lead to the development of approaches, efficiently stimulating regenerative pathways in mammalians.
After: A comprehensive repository for omics data from the red spotted newt Notophthalmus viridescens from high throughput experiments. Newt-Omics aims to provide a comprehensive platform of expressed genes during tissue regeneration, including extensive annotations, expression data and experimentally verified peptide sequences with yet no homology to other publically available gene sequences. The goal is to obtain a detailed understanding of the molecular processes underlying tissue regeneration in the newt,that may lead to the development of approaches, efficiently stimulating regenerative pathways in mammalians.
Edits to 'https://fairsharing.org/FAIRsharing.k6a8e5' by 'The FAIRsharing Team' at 17:27, 12 Sep 2016 (approved):
'contactName' has been modified:
Before:
After:
Thomas Braun
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Removed:
Access / Retrieve Data
Conditions of Use
Data Versioning
| versioning by date
|
No link recorded |
| newer versions are compatible with older versions
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No link recorded |
Data Release
| ad-hoc release
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No link recorded |
Data Curation
| manual curation
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No link recorded |
Data Access
| file download(tab-delimited)
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No link recorded |
| MySQL database dump
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No link recorded |
Publications
Analysis of newly established EST databases reveals similarities between heart regeneration in newt and fish.
Borchardt T., Looso M., Bruckskotten M., Weis P., Kruse J., Braun T.,
BMC Genomics 2010
View Paper (PubMed)
View Publication
Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry.
Looso M., Borchardt T., Krüger M., Braun T.,
Mol. Cell Proteomics 2010
View Paper (PubMed)
View Publication
A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration.
Looso M, Preussner J, Sousounis K, Bruckskotten M, Michel CS, Lignelli E, Reinhardt R, Höffner S, Krüger M, Tsonis PA, Borchardt T, Braun T
Genome Biol. 2013
View Paper (PubMed)
View Publication
Related Standards
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Metrics
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Implementing Policies
This record is not implemented by any policy.
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