Newt-omics
General Information
A comprehensive repository for omics data from the red spotted newt Notophthalmus viridescens from high throughput experiments. Newt-Omics aims to provide a comprehensive platform of expressed genes during tissue regeneration, including extensive annotations, expression data and experimentally verified peptide sequences with yet no homology to other publically available gene sequences. The goal is to obtain a detailed understanding of the molecular processes underlying tissue regeneration in the newt,that may lead to the development of approaches, efficiently stimulating regenerative pathways in mammalians.
How to cite this record
FAIRsharing.org: Newt-omics; Newt-omics; DOI: https://doi.org/10.25504/FAIRsharing.k6a8e5;
Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 26 2021 2:51 a.m.
Show edit history
Hide edit history
Edits to 'https://fairsharing.org/FAIRsharing.k6a8e5' by 'The FAIRsharing Team' at 11:58, 21 Nov 2018 (not approved):
'domains' has been modified:
Before:
Annotation
Complementary DNA (cDNA)
DNA sequencing
Gene Ontology (GO) enrichment
Life Science
Peptide
Protein identification
After:
Annotation
Complementary DNA (cDNA)
DNA sequencing
Gene Ontology (GO) enrichment
Life Science
Peptide
Protein identification
Transcript
Added:
Transcript
Removed:
'contact' has been modified:
Before: Thomas Braun
After: Thomas Braun
'description' has been modified:
Before: A comprehensive repository for omics data from the red spotted newt Notophthalmus viridescens from high throughput experiments. Newt-Omics aims to provide a comprehensive platform of expressed genes during tissue regeneration, including extensive annotations, expression data and experimentally verified peptide sequences with yet no homology to other publically available gene sequences. The goal is to obtain a detailed understanding of the molecular processes underlying tissue regeneration in the newt,that may lead to the development of approaches, efficiently stimulating regenerative pathways in mammalians.
After: A comprehensive repository for omics data from the red spotted newt Notophthalmus viridescens from high throughput experiments. Newt-Omics aims to provide a comprehensive platform of expressed genes during tissue regeneration, including extensive annotations, expression data and experimentally verified peptide sequences with yet no homology to other publically available gene sequences. The goal is to obtain a detailed understanding of the molecular processes underlying tissue regeneration in the newt,that may lead to the development of approaches, efficiently stimulating regenerative pathways in mammalians.
Edits to 'https://fairsharing.org/FAIRsharing.k6a8e5' by 'The FAIRsharing Team' at 17:27, 12 Sep 2016 (approved):
'contactName' has been modified:
Before:
After:
Thomas Braun
Added:
Removed:
Access / Retrieve Data
Conditions of Use
Data Versioning
versioning by date
|
No link recorded |
newer versions are compatible with older versions
|
No link recorded |
Data Release
ad-hoc release
|
No link recorded |
Data Curation
manual curation
|
No link recorded |
Data Access
file download(tab-delimited)
|
No link recorded |
MySQL database dump
|
No link recorded |
Publications
Analysis of newly established EST databases reveals similarities between heart regeneration in newt and fish.
Borchardt T., Looso M., Bruckskotten M., Weis P., Kruse J., Braun T.,
BMC Genomics 2010
View Paper (PubMed)
View Publication
Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry.
Looso M., Borchardt T., Krüger M., Braun T.,
Mol. Cell Proteomics 2010
View Paper (PubMed)
View Publication
A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration.
Looso M, Preussner J, Sousounis K, Bruckskotten M, Michel CS, Lignelli E, Reinhardt R, Höffner S, Krüger M, Tsonis PA, Borchardt T, Braun T
Genome Biol. 2013
View Paper (PubMed)
View Publication
Related Standards
Reporting Guidelines
No guidelines defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Related Databases
No related databases defined
Implementing Policies
This record is not implemented by any policy.
We need your help!
Do you have 5-10 minutes to help FAIRsharing prioritize future enhancements?
Then please fill out this short questionnaire to
prioritise the improvements that are of greatest importance to you.
Your views will help us choose which enhancements to provide first. Thank you very much!