databases > DOI:10.25504/FAIRsharing.k6a8e5

ready Newt-omics

General Information
A comprehensive repository for omics data from the red spotted newt Notophthalmus viridescens from high throughput experiments. Newt-Omics aims to provide a comprehensive platform of expressed genes during tissue regeneration, including extensive annotations, expression data and experimentally verified peptide sequences with yet no homology to other publically available gene sequences. The goal is to obtain a detailed understanding of the molecular processes underlying tissue regeneration in the newt,that may lead to the development of approaches, efficiently stimulating regenerative pathways in mammalians.

Homepage http://newt-omics.mpi-bn.mpg.de

Developed in Germany

Created in 2011






How to cite this record FAIRsharing.org: Newt-omics; Newt-omics; DOI: https://doi.org/10.25504/FAIRsharing.k6a8e5; Last edited: Feb. 22, 2018, 2:43 p.m.; Last accessed: Oct 18 2018 12:53 p.m.


This record is maintained by Jenzopr  ORCID

Record updated: Sept. 12, 2016, 5:27 p.m. by The FAIRsharing Team.

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General

help http://newt-omics.mpi-bn.mpg.de/tutorial ...

Additional Information

Contact Thomas Braun   ORCID


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Data Versioning

versioning by date No link recorded
newer versions are compatible with older versions No link recorded

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ad-hoc release No link recorded

Data Curation

manual curation No link recorded

Data Access

file download(tab-delimited) No link recorded
MySQL database dump No link recorded



Publications

Analysis of newly established EST databases reveals similarities between heart regeneration in newt and fish.

Borchardt T., Looso M., Bruckskotten M., Weis P., Kruse J., Braun T.,
BMC Genomics 2010

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Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry.

Looso M., Borchardt T., Krüger M., Braun T.,
Mol. Cell Proteomics 2010

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A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration.

Looso M, Preussner J, Sousounis K, Bruckskotten M, Michel CS, Lignelli E, Reinhardt R, Höffner S, Krüger M, Tsonis PA, Borchardt T, Braun T
Genome Biol. 2013

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