Edits to 'https://fairsharing.org/FAIRsharing.hmb1f4' by 'The FAIRsharing Team' at 12:35, 17 Mar 2020 (approved):
'status' has been modified:
Before: RDY
After: UNC
'organizations' has been modified:
Before:
Bioinformatics Laboratory, Institute of Biophysics, Chinese Academy of Sciences (CAS), Beijing, China|http://english.ibp.cas.cn|Maintains
Ministry of Science and Technology, Beijing, China|http://www.most.gov.cn/eng/programmes1/|Undefined
Chinese Academy of Sciences (CAS), China|http://www.cas.cn/|Funds
National Natural Science Foundation of China (NSFC), Beijing, China|http://www.nsfc.gov.cn/|Funds
After:
Chinese Academy of Sciences (CAS), China|http://www.cas.cn/|Funds
National Natural Science Foundation of China (NSFC), Beijing, China|http://www.nsfc.gov.cn/|Funds
Bioinformatics Laboratory, Institute of Biophysics, Chinese Academy of Sciences (CAS), Beijing, China|http://english.ibp.cas.cn|Maintains
Ministry of Science and Technology, Beijing, China|http://www.most.gov.cn/eng/programmes1/|Funds
National Genomics Data Center (BIG Data Center), Beijing Institute of Genomics, Chinese Academy of Sciences, Bejing, China|http://bigd.big.ac.cn/|Maintains
Added:
Ministry of Science and Technology, Beijing, China|http://www.most.gov.cn/eng/programmes1/|Funds
National Genomics Data Center (BIG Data Center), Beijing Institute of Genomics, Chinese Academy of Sciences, Bejing, China|http://bigd.big.ac.cn/|Maintains
Removed:
Ministry of Science and Technology, Beijing, China|http://www.most.gov.cn/eng/programmes1/|Undefined
'standardsImplemented' has been modified:
Before:
GenBank Sequence Format
FASTA Sequence Format
After:
GenBank Sequence Format
FASTA Sequence Format
Browser Extensible Data Format
Added:
Browser Extensible Data Format
Removed:
'related_databases' has been modified:
Before:
Ensembl
RNAcentral
After:
GenBank
FlyBase
The Arabidopsis Information Resource
Ensembl
Gene Expression Omnibus
PubMed
Reference Sequence Database
LNCipedia
RNAcentral
Added:
GenBank
FlyBase
The Arabidopsis Information Resource
Gene Expression Omnibus
PubMed
Reference Sequence Database
LNCipedia
Removed:
'supportLinks' has been modified:
Before:
FAQ|http://www.noncode.org/faq.php
wikipedia|https://en.wikipedia.org/wiki/NONCODE
After:
FAQ|http://www.noncode.org/faq.php
email|rschen@ibp.ac.cn
online documentation|http://www.noncode.org/analysis.php
online documentation|http://www.noncode.org/introduce.php
wikipedia|https://en.wikipedia.org/wiki/NONCODE
Added:
email|rschen@ibp.ac.cn
online documentation|http://www.noncode.org/analysis.php
online documentation|http://www.noncode.org/introduce.php
Removed:
'description' has been modified:
Before: NONCODE is a database of noncoding RNAs (except tRNAs and rRNAs). This resource is a comprehensive collection and annotation of noncoding RNAs including details of long noncoding (lnc) RNAs. The database provides access to data on the relationships of lncRNAs to disease, conservation annotation, and high-quality datasets.
After: NONCODE is a database of noncoding RNAs (except tRNAs and rRNAs), including long noncoding (lnc) RNAs. Information contained within the database includes human lncRNA?disease relationships and single nucleotide polymorphism-lncRNA?disease relationships; human exosome lncRNA expression profiles; and predicted RNA secondary structures of human transcripts. This resource has not been updated since 2017, and therefore its status has been marked as Uncertain. Please get in touch if you have any information about the current status of this resource.
'user_defined_tags' has been modified:
Before:
Mapping information and coding potential
After:
Added:
Removed:
Mapping information and coding potential
'onto_disciplines' has been modified:
Before:
Biomedical Science
Life Science
After:
Genetics
Added:
Genetics
Removed:
Biomedical Science
Life Science
'onto_domains' has been modified:
Before:
Function analysis
ncRNA
After:
Function analysis
Gene expression data
RNA secondary structure
RNA sequence
extracellular exosome
gene expression
lnc_RNA
long non-coding ribonucleic acid
ncRNA
Added:
Gene expression data
RNA secondary structure
RNA sequence
extracellular exosome
gene expression
lnc_RNA
long non-coding ribonucleic acid
Removed:
'contactEmail' has been modified:
Before: michaelzhang@tsinghua.edu.cn
After: biozy@ict.ac.cn
'contact' has been modified:
Before: Michael Zhang
After:
'miriam_id' has been modified:
Before: None
After:
'publications' has been modified:
Before:
NONCODE: an integrated knowledge database of non-coding RNAs.|Liu C., Bai B., Skogerb G., Cai L., Deng W., Zhang Y., Bu D., Zhao Y., Chen R., |Nucleic Acids Res.|2005
NONCODE v2.0: decoding the non-coding.|He S., Liu C., Skogerb G., Zhao H., Wang J., Liu T., Bai B., Zhao Y., Chen R., |Nucleic Acids Res.|2008
NONCODE 2016: an informative and valuable data source of long non-coding RNAs.|Zhao Y,Li H,Fang S,Kang Y,Wu W,Hao Y,Li Z,Bu D,Sun N,Zhang MQ,Chen R|Nucleic Acids Res|2015
After:
NONCODE: an integrated knowledge database of non-coding RNAs.|Liu C., Bai B., Skogerb G., Cai L., Deng W., Zhang Y., Bu D., Zhao Y., Chen R., |Nucleic Acids Res.|2005
NONCODE v2.0: decoding the non-coding.|He S., Liu C., Skogerb G., Zhao H., Wang J., Liu T., Bai B., Zhao Y., Chen R., |Nucleic Acids Res.|2008
NONCODE 2016: an informative and valuable data source of long non-coding RNAs.|Zhao Y,Li H,Fang S,Kang Y,Wu W,Hao Y,Li Z,Bu D,Sun N,Zhang MQ,Chen R|Nucleic Acids Res|2015
NONCODEV5: a comprehensive annotation database for long non-coding RNAs.|Fang S,Zhang L,Guo J,Niu Y,Wu Y,Li H,Zhao L,Li X,Teng X,Sun X,Sun L,Zhang MQ,Chen R,Zhao Y|Nucleic Acids Res|2017
Added:
NONCODEV5: a comprehensive annotation database for long non-coding RNAs.|Fang S,Zhang L,Guo J,Niu Y,Wu Y,Li H,Zhao L,Li X,Teng X,Sun X,Sun L,Zhang MQ,Chen R,Zhao Y|Nucleic Acids Res|2017
Removed:
'dataProcesses' has been modified:
Before:
daily release
manual curation
web interface
file download(tab-delimited, FASTA)
SOAP
SQL database dump
DAS server
database search
After:
Browse
Download
Search Functions
Search Conserved Status
Search Diseases
Search
Added:
Browse
Download
Search Functions
Search Conserved Status
Search Diseases
Search
Removed:
daily release
manual curation
web interface
file download(tab-delimited, FASTA)
SOAP
SQL database dump
DAS server
database search
'tools' has been modified:
Before:
BLAST||http://www.noncode.org/blast.php
After:
BLAST||http://www.noncode.org/blast.php
ID Convertor||http://www.noncode.org/id_conversion.php
iLncRNA (Idenfication)||http://www.noncode.org/iLncRNA.php
Added:
ID Convertor||http://www.noncode.org/id_conversion.php
iLncRNA (Idenfication)||http://www.noncode.org/iLncRNA.php
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.hmb1f4' by 'The FAIRsharing Team' at 18:59, 12 Sep 2016 (approved):
'description' has been modified:
Before: A database of noncoding RNAs. NONCODE is a database of all kinds of noncoding RNAs (except tRNAs and rRNAs). It is distinguished from other ncRNA databases by a number of factors. Firstly, almost all traditional ncRNA classes are included. NONCODE authors regularly update it to maintain an up-to-date and comprehensive resource. Secondly|all the sequences are confirmed by consulting the references manually|and more than 80% data are from experiments. Thirdly|NONCODE has used the concept of lncRNA genes to help systematic understanding of lncRNAs|based on alternative splicing pattern similar to mRNAs. Finally|the expression profile of lncRNA genes are available via graphs based on public RNA-seq data for human and mouse. They also attempt to predict functions of these lncRNA genes.
After: NONCODE is a database of noncoding RNAs (except tRNAs and rRNAs). This resource is a comprehensive collection and annotation of noncoding RNAs including details of long noncoding (lnc) RNAs. The database provides access to data on the relationships of lncRNAs to disease, conservation annotation, and high-quality datasets.