databases > DOI:10.25504/FAIRsharing.y3scf6

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The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). Pfam also generates higher-level groupings of related entries, known as clans. A clan is a collection of Pfam entries which are related by similarity of sequence, structure or profile-HMM.


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How to cite this record FAIRsharing.org: Pfam; Pfam; DOI: https://doi.org/10.25504/FAIRsharing.y3scf6; Last edited: Aug. 13, 2018, 11:56 a.m.; Last accessed: Sep 22 2018 1:42 p.m.

How to cite this resource  The Pfam protein families database: towards a more sustainable future. Finn RD,Coggill P,Eberhardt RY,Eddy SR,Mistry J,Mitchell AL,Potter SC,Punta M,Qureshi M,Sangrador-Vegas A,Salazar GA,Tate J,Bateman A; Nucleic Acids Res ; 2015; 10.1093/nar/gkv1344;


Record updated: Aug. 13, 2018, 10:22 a.m. by The FAIRsharing Team.

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Publications

The Pfam protein families database.

Finn RD., Mistry J., Tate J., Coggill P., Heger A., Pollington JE., Gavin OL., Gunasekaran P., Ceric G., Forslund K., Holm L., Sonnhammer EL., Eddy SR., Bateman A.,
Nucleic Acids Res. 2010

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The Pfam protein families database: towards a more sustainable future.

Finn RD,Coggill P,Eberhardt RY,Eddy SR,Mistry J,Mitchell AL,Potter SC,Punta M,Qureshi M,Sangrador-Vegas A,Salazar GA,Tate J,Bateman A
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Pfam: the protein families database.

Finn RD,Bateman A,Clements J,Coggill P,Eberhardt RY,Eddy SR,Heger A,Hetherington K,Holm L,Mistry J,Sonnhammer EL,Tate J,Punta M
Nucleic Acids Res 2013

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The Pfam protein families database.

Punta M,Coggill PC,Eberhardt RY,Mistry J,Tate J,Boursnell C,Pang N,Forslund K,Ceric G,Clements J,Heger A,Holm L,Sonnhammer EL,Eddy SR,Bateman A,Finn RD
Nucleic Acids Res 2011

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The Pfam protein families database.

Finn RD,Tate J,Mistry J,Coggill PC,Sammut SJ,Hotz HR,Ceric G,Forslund K,Eddy SR,Sonnhammer EL,Bateman A
Nucleic Acids Res 2007

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Pfam: clans, web tools and services.

Finn RD,Mistry J,Schuster-Bockler B,Griffiths-Jones S,Hollich V,Lassmann T,Moxon S,Marshall M,Khanna A,Durbin R,Eddy SR,Sonnhammer EL,Bateman A
Nucleic Acids Res 2005

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Pfam: a comprehensive database of protein domain families based on seed alignments.

Sonnhammer EL,Eddy SR,Durbin R
Proteins 1997

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  • 108433/Z/15/Z (The Wellcome Trust)

  • BB/L024136/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • WT077044/Z/05/Z (The Wellcome Trust)