Databases > DOI:10.25504/FAIRsharing.wv5q9d

ready ProtoNet

General Information
This resource is a hierarchical clustering of UniProt protein sequences into hierarchical trees. This resource allows for the study of sub-family and super-family of a protein, using UniRef50 clusters.

How to cite this record: ProtoNet; ProtoNet; DOI:; Last edited: Feb. 22, 2018, 2:44 p.m.; Last accessed: Mar 18 2018 11:11 p.m.

Record updated: Jan. 10, 2018, 11:52 a.m. by The FAIRsharing Team.



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ProtoNet: hierarchical classification of the protein space.

Sasson O., Vaaknin A., Fleischer H., Portugaly E., Bilu Y., Linial N., Linial M.,
Nucleic Acids Res. 2003

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ProtoNet 4.0: a hierarchical classification of one million protein sequences.

Kaplan N., Sasson O., Inbar U., Friedlich M., Fromer M., Fleischer H., Portugaly E., Linial N., Linial M.,
Nucleic Acids Res. 2005

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Fishing with (Proto)Net-a principled approach to protein target selection.

Linial M.,
Comp. Funct. Genomics 2003

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Connect the dots: exposing hidden protein family connections from the entire sequence tree.

Loewenstein Y., Linial M.,
Bioinformatics 2008

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Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space.

Loewenstein Y., Portugaly E., Fromer M., Linial M.,
Bioinformatics 2008

View Paper (PubMed)

Functional annotation prediction: all for one and one for all.

Sasson O., Kaplan N., Linial M.,
Protein Sci. 2006

View Paper (PubMed)

A functional hierarchical organization of the protein sequence space.

Kaplan N., Friedlich M., Fromer M., Linial M.,
BMC Bioinformatics 2004

View Paper (PubMed)

A robust method to detect structural and functional remote homologues.

Shachar O., Linial M.,
Proteins 2004

View Paper (PubMed)

ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree.

Rappoport N,Karsenty S,Stern A,Linial N,Linial M
Nucleic Acids Res 2011

View Paper (PubMed) View Paper (DOI)

ProtoNet: charting the expanding universe of protein sequences.

Rappoport N,Linial N,Linial M
Nat Biotechnol 2013

View Paper (PubMed) View Paper (DOI)