How to cite this record FAIRsharing.org: ProtoNet; ProtoNet; DOI: https://doi.org/10.25504/FAIRsharing.wv5q9d; Last edited: Feb. 22, 2018, 2:44 p.m.; Last accessed: Nov 21 2018 6:40 p.m.
Record updated: Jan. 10, 2018, 11:52 a.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.wv5q9d' by 'The FAIRsharing Team' at 11:52, 10 Jan 2018 (approved): 'name' has been modified: Before: ProtoNet 6.0: Organizing 10 million protein sequences into a compact hierarchical family tree After: ProtoNet
Edits to 'https://fairsharing.org/FAIRsharing.wv5q9d' by 'The FAIRsharing Team' at 21:42, 13 Sep 2016 (approved): 'description' has been modified: Before: Hierarchical clustering of UniProt proteins After: This resource is a hierarchical clustering of UniProt protein sequences into hierarchical trees. This resource allows for the study of sub-family and super-family of a protein, using UniRef50 clusters.
Conditions of Use
|versioning by release||No link recorded|
|yearly release||No link recorded|
|automated curation||No link recorded|
|web interface||No link recorded|
|file download(CSV,txt,tab-delimited)||No link recorded|
ProtoNet: hierarchical classification of the protein space.
Sasson O., Vaaknin A., Fleischer H., Portugaly E., Bilu Y., Linial N., Linial M.,
Nucleic Acids Res. 2003
ProtoNet 4.0: a hierarchical classification of one million protein sequences.
Kaplan N., Sasson O., Inbar U., Friedlich M., Fromer M., Fleischer H., Portugaly E., Linial N., Linial M.,
Nucleic Acids Res. 2005
Fishing with (Proto)Net-a principled approach to protein target selection.
Comp. Funct. Genomics 2003
Connect the dots: exposing hidden protein family connections from the entire sequence tree.
Loewenstein Y., Linial M.,
Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space.
Loewenstein Y., Portugaly E., Fromer M., Linial M.,
Functional annotation prediction: all for one and one for all.
Sasson O., Kaplan N., Linial M.,
Protein Sci. 2006
A functional hierarchical organization of the protein sequence space.
Kaplan N., Friedlich M., Fromer M., Linial M.,
BMC Bioinformatics 2004
A robust method to detect structural and functional remote homologues.
Shachar O., Linial M.,
ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree.
Rappoport N,Karsenty S,Stern A,Linial N,Linial M
Nucleic Acids Res 2011
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Models and Formats
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European Community Seventh Framework Programme (Government body)
Horowitz Foundation for Social Policy (Government body)
Israel Science Foundation (Government body)
Ministry of Defence, Tel Aviv, Israel (Government body)
Minister of Science, Technology and Space (MOST), Tel Aviv, Israel (Government body)
ISF 592/07 (Israel Science Foundation)