How to cite this record
FAIRsharing.org: Rhea; Rhea; DOI: https://doi.org/10.25504/FAIRsharing.pn1sr5;
Last edited: Jan. 17, 2019, 12:55 p.m.; Last accessed: Feb 16 2019 9:08 p.m.
Publication for citation
Updates in Rhea - an expert curated resource of biochemical reactions.
Morgat A, Lombardot T, Axelsen KB, Aimo L, Niknejad A, Hyka-Nouspikel N, Coudert E, Pozzato M, Pagni M, Moretti S, Rosanoff S, Onwubiko J, Bougueleret L, Xenarios I, Redaschi N, Bridge A.; Nucleic Acids Res. ;
2017;
10.1093/nar/gkw990;
Edits to 'https://fairsharing.org/FAIRsharing.pn1sr5' by 'The FAIRsharing Team' at 12:55, 17 Jan 2019 (approved):
'organizations' has been modified:
Before:
Swiss Federal Government (SERI)|https://www.sbfi.admin.ch/sbfi/en/home.html|Funds
SystemsX.ch|http://www.systemsx.ch/|Funds
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
After:
Swiss Federal Government (SERI)|https://www.sbfi.admin.ch/sbfi/en/home.html|Funds
SystemsX.ch|http://www.systemsx.ch/|Funds
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Added:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Removed:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
Edits to 'https://fairsharing.org/FAIRsharing.pn1sr5' by 'The FAIRsharing Team' at 12:55, 17 Jan 2019 (approved):
'organizations' has been modified:
Before:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
Swiss Federal Government (SERI)|https://www.sbfi.admin.ch/sbfi/en/home.html|Funds
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
SystemsX.ch|http://www.systemsx.ch/|Funds
After:
Swiss Federal Government (SERI)|https://www.sbfi.admin.ch/sbfi/en/home.html|Funds
SystemsX.ch|http://www.systemsx.ch/|Funds
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
Added:
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
Removed:
'related_databases' has been modified:
Before:
Mechanism, Annotation and Classification in Enzymes
MetaCyc
MetaboLights
Reactome - a curated knowledgebase of biological pathways
UniPathway
UniProt Knowledgebase
Kyoto Encyclopedia of Genes and Genomes
SwissLipids
MetaNetX
After:
Mechanism, Annotation and Classification in Enzymes
MetaCyc
MetaboLights
Integrated relational Enzyme database
Reactome - a curated knowledgebase of biological pathways
UniPathway
UniProt Knowledgebase
Kyoto Encyclopedia of Genes and Genomes
SwissLipids
MetaNetX
Enzyme nomenclature database
Added:
Integrated relational Enzyme database
Enzyme nomenclature database
Removed:
'supportLinks' has been modified:
Before:
contact form|http://www.rhea-db.org/feedback
online documentation|http://www.rhea-db.org/documentation
After:
contact form|http://www.rhea-db.org/feedback
online documentation|http://www.rhea-db.org/documentation
online documentation|https://www.rhea-db.org/statistics
Added:
online documentation|https://www.rhea-db.org/statistics
Removed:
'dataProcesses' has been modified:
Before:
FTP download
monthly release
manual curation
user request
advanced search
submit
browse
After:
FTP download
Download Data
manual curation
Data Submission
Advanced search
Browse
Added:
Download Data
Data Submission
Advanced search
Browse
Removed:
monthly release
user request
advanced search
submit
browse
'accessPoints' has been modified:
Before:
REST|http://www.rhea-db.org/rest/1.0/ws/reaction?q=caffeine|Rhea webservice
After:
REST|https://www.rhea-db.org/webservice|Rhea Web Services
Added:
REST|https://www.rhea-db.org/webservice|Rhea Web Services
Removed:
REST|http://www.rhea-db.org/rest/1.0/ws/reaction?q=caffeine|Rhea webservice
'tools' has been modified:
Before:
ChemAxon||https://www.chemaxon.com/
Metabolic Tinker||http://osslab.lifesci.warwick.ac.uk/tinker.aspx
RxnSim|1.0.1|https://cran.r-project.org/web/packages/RxnSim/index.html
After:
ChemAxon||https://www.chemaxon.com/
Metabolic Tinker||http://osslab.lifesci.warwick.ac.uk/tinker.aspx
RxnSim|1.0.1|https://cran.r-project.org/web/packages/RxnSim/index.html
SPARQL Endpoint||http://sparql.rhea-db.org/
Added:
SPARQL Endpoint||http://sparql.rhea-db.org/
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.pn1sr5' by 'amorgat' at 08:46, 02 Dec 2016 (approved):
'description' has been modified:
Before: Rhea is a comprehensive and non-redundant resource of biochemical reactions described using species from the ChEBI (Chemical Entities of Biological Interest) ontology of small molecules. Rhea has been designed for the functional annotation of enzymes and the description, analysis and reconciliation of genome-scale metabolic networks.
After: Rhea is a comprehensive and non-redundant resource of expert-curated biochemical reactions designed for the functional annotation of enzymes and the description of metabolic networks. Rhea describes enzyme-catalyzed reactions covering the IUBMB Enzyme Nomenclature list as well as additional reactions, including spontaneously occurring reactions, using entities from the ChEBI (Chemical Entities of Biological Interest) ontology of small molecules. Publication List has changed: Previous values: Updates in Rhea--a manually curated resource of biochemical reactions. Rhea--a manually curated resource of biochemical reactions. Updates in rhea-an expert curated resource of biochemical reactions. New values: Updates in Rhea--a manually curated resource of biochemical reactions. Rhea--a manually curated resource of biochemical reactions. Added Rhea to policy F1000Research Data Policy.
Edits to 'https://fairsharing.org/FAIRsharing.pn1sr5' by 'amorgat' at 12:29, 30 Nov 2016 (approved):
'contactEmail' has been modified:
Before: anne.morgat@isb-sib.ch
After: anne.morgat@sib.swiss Domain list has changed: Previous values: Biochemistry|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Scientific-Discipline.owl#nlx_inv_100610 Chemical entity|material|http://purl.obolibrary.org/obo/CHEBI_24431 Enzymatic reaction|process|http://purl.obolibrary.org/obo/MI_0414 Life Science|domain| Manual curation|x| Reaction|| Small molecule|material| New values: Biochemistry|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Scientific-Discipline.owl#nlx_inv_100610 Enzymatic reaction|process|http://purl.obolibrary.org/obo/MI_0414 Reaction|| Chemical entity|material|http://purl.obolibrary.org/obo/CHEBI_24431 Small molecule|material| Life Science|domain| Manual curation|x| Countries have changed: Previous values: European Union Switzerland New values: Switzerland European Union Publication List has changed: Previous values: Updates in Rhea--a manually curated resource of biochemical reactions. Rhea--a manually curated resource of biochemical reactions. New values: Updates in Rhea--a manually curated resource of biochemical reactions. Rhea--a manually curated resource of biochemical reactions. Updates in rhea-an expert curated resource of biochemical reactions. Organisations have changed: Previous values: European Bioinformatics Institute (EMBL-EBI)|Wellcome Trust Genome Campus|Hinxton|Cambridge|UK European Commission FP7 SIB|Swiss Institute of Bioinformatics Swiss Federal Government (SERI) SystemsX.ch New values: SIB|Swiss Institute of Bioinformatics European Bioinformatics Institute (EMBL-EBI)|Wellcome Trust Genome Campus|Hinxton|Cambridge|UK Swiss Federal Government (SERI) SystemsX.ch Grants have changed: Previous values: 222886-2 New values: Added Rhea to policy F1000Research Data Policy.
Edits to 'https://fairsharing.org/FAIRsharing.pn1sr5' by 'The FAIRsharing Team' at 14:14, 08 Sep 2016 (approved):
'name' has been modified:
Before: Rhea: an expert curated resource of biochemical reactions
After: Rhea
Edits to 'https://fairsharing.org/FAIRsharing.pn1sr5' by 'The FAIRsharing Team' at 17:39, 02 Sep 2016 (approved):
'contactName' has been modified:
Before:
Anne MORGAT
After:
Anne Morgat
Data processes have changed:
Previous values:
FTP download
monthly release
manual curation
user request
web interface
web service
New values:
FTP download
monthly release
manual curation
user request
advanced search
submit
browse
Added:
Removed: