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miRNEST

General Information

miRNEST is an integrative collection of animal, plant and virus microRNA data. miRNEST is being gradually developed to create an integrative resource of miRNA-associated data. The data comes from our computational predictions (new miRNAs, targets, mirtrons, miRNA gene structures) as well as from other databases and publications.

Homepage http://mirnest.amu.edu.pl

Countries that developed this resource Poland

Created in 2011

Taxonomic range

All

Knowledge Domains

Subjects

User-defined Tags

Deep sequencing reads aligned to miRNAs

How to cite this record FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Apr 10 2020 6:04 a.m.

Record updated: Nov. 21, 2018, 11:49 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.5pfx4r' by 'The FAIRsharing Team' at 11:49, 21 Nov 2018 (not approved):

	'domains' has been modified:
		Before:
			Computational predictions
			Deep sequencing reads aligned to miRNAs
			Gene expression data
			Genomics
			Life Science
			Micro RNA (miRNA)
			MicroRNA (miRNA) target site
			Multiple sequence alignment
			Pre-miRNA (pre-microRNA)
			Promoter
			RNA secondary structure
			RNA sequence
			Regulation of miRNA metabolic process
			Sequencing read
			Target
		After:
			Computational predictions
			Deep sequencing reads aligned to miRNAs
			Gene expression data
			Genetic polymorphism
			Genomics
			Life Science
			Micro RNA (miRNA)
			MicroRNA (miRNA) target site
			Multiple sequence alignment
			Pre-miRNA (pre-microRNA)
			Promoter
			RNA secondary structure
			RNA sequence
			Regulation of miRNA metabolic process
			Sequencing read
			Target
		Added:
			Genetic polymorphism
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.5pfx4r' by 'The FAIRsharing Team' at 11:03, 21 Nov 2018 (not approved):

	'domains' has been modified:
		Before:
			Deep sequencing reads aligned to miRNAs
			Gene expression data
			Genetic polymorphism
			Genomics
			Life Science
			Micro RNA (miRNA)
			MicroRNA (miRNA) target site
			Multiple sequence alignment
			Pre-miRNA (pre-microRNA)
			Prediction and recognition
			Promoter
			RNA secondary structure
			RNA sequence
			Regulation of miRNA metabolic process
			Sequencing read
			Target
		After:
			Computational predictions
			Deep sequencing reads aligned to miRNAs
			Gene expression data
			Genetic polymorphism
			Genomics
			Life Science
			Micro RNA (miRNA)
			MicroRNA (miRNA) target site
			Multiple sequence alignment
			Pre-miRNA (pre-microRNA)
			Promoter
			RNA secondary structure
			RNA sequence
			Regulation of miRNA metabolic process
			Sequencing read
			Target
		Added:
			Computational predictions
		Removed:
			Prediction and recognition

	'contact' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.5pfx4r' by 'The FAIRsharing Team' at 11:10, 10 Apr 2018 (approved):

	'description' has been modified:
		Before: miRNEST is an integrative collection of animal, plant and virus microRNA data.
		After: miRNEST is an integrative collection of animal, plant and virus microRNA data. miRNEST is being gradually developed to create an integrative resource of miRNA-associated data. The data comes from our computational predictions (new miRNAs, targets, mirtrons, miRNA gene structures) as well as from other databases and publications.

Edits to 'https://fairsharing.org/FAIRsharing.5pfx4r' by 'The FAIRsharing Team' at 15:15, 02 Sep 2016 (approved):

	'description' has been modified:
		Before: microRNAs in animal and plant EST sequences
		After: miRNEST is an integrative collection of animal, plant and virus microRNA data.

Support

General

online documentation	What's New in miRNEST
wikipedia	https://en.wikipedia.org/wiki/MiRNEST

Additional Information

Contact

None

Tools

Deep-seq predictions	http://rhesus.amu.edu.pl/mirnest/copy/deep.php
Mirtrons	http://rhesus.amu.edu.pl/mirnest/copy/mirtrons.php
miRNA gene filtering	http://rhesus.amu.edu.pl/mirnest/copy/mirna_gene_structure.php
Degradomes	http://rhesus.amu.edu.pl/mirnest/copy/degradomes.php

Access / Retrieve Data

Conditions of Use

Data Versioning

no versioning policy	No link recorded
no access to historical files	No link recorded

Data Curation

upload

http://rhesus.amu.edu.pl/mirnest/copy/uploads.php

Data Access

browse	http://rhesus.amu.edu.pl/mirnest/copy/browse.php
download	http://rhesus.amu.edu.pl/mirnest/copy/downloads.php

Publications

miRNEST database: an integrative approach in microRNA search and annotation.

Szcześniak MW., Deorowicz S., Gapski J., Kaczyński Ł., Makalowska I.,
Nucleic Acids Res. 2012

View Paper (PubMed) View Publication

miRNEST 2.0: a database of plant and animal microRNAs.

Szczesniak MW,Makalowska I
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Gene Ontology

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Maintains

Laboratory of Bioinformatics, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland

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