databases > DOI:10.25504/FAIRsharing.htzwqf

ready PASS2

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PASS2 contains alignments of structural motifs of protein superfamilies. PASS2 is an automatic version of the original superfamily alignment database, CAMPASS (CAMbridge database of Protein Alignments organised as Structural Superfamilies). PASS2 contains alignments of protein structures at the superfamily level and is in direct correspondence with SCOPe 2.04 release.




How to cite this record FAIRsharing.org: PASS2; PASS2; DOI: https://doi.org/10.25504/FAIRsharing.htzwqf; Last edited: Feb. 22, 2018, 2:45 p.m.; Last accessed: Sep 22 2018 1:52 p.m.


Record updated: July 13, 2017, 2:04 p.m. by The FAIRsharing Team.

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Publications

Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming.

Sali A., Blundell TL.,
J. Mol. Biol. 1990

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Protein three-dimensional structural databases: domains, structurally aligned homologues and superfamilies.

Sowdhamini R., Burke DF., Deane C., Huang JF., Mizuguchi K., Nagarajaram HA., Overington JP., Srinivasan N., Steward RE., Blundell TL.,
Acta Crystallogr. D Biol. Crystallogr. 1998

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JOY: protein sequence-structure representation and analysis.

Mizuguchi K., Deane CM., Blundell TL., Johnson MS., Overington JP.,
Bioinformatics 1998

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PASS2: a semi-automated database of protein alignments organised as structural superfamilies.

Mallika V., Bhaduri A., Sowdhamini R.,
Nucleic Acids Res. 2002

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PASS2: an automated database of protein alignments organised as structural superfamilies.

Bhaduri A., Pugalenthi G., Sowdhamini R.,
BMC Bioinformatics 2004

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CAMPASS: a database of structurally aligned protein superfamilies.

Sowdhamini R., Burke DF., Huang JF., Mizuguchi K., Nagarajaram HA., Srinivasan N., Steward RE., Blundell TL.,
Structure 1998

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  • BT/01/COE/09/01 (Department of Biotechnology, Ministry of Science and Technology, India)