Databases > DOI:10.25504/FAIRsharing.12yd2z
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ready The UCSC Archaeal Genome Browser

General Information
The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq entries, with overlays of sequence conservation across multiple species, nucleotide and protein motifs, non-coding RNA predictions, operon predictions, and other types of bioinformatic analyses. In addition, we display available gene expression data (microarray or high-throughput RNA sequencing). Direct contributions or notices of publication of functional genomic data or bioinformatic analyses from archaeal research labs are very welcome.

Homepage http://archaea.ucsc.edu

Developed in United States

Created in 2005






How to cite this record FAIRsharing.org: The UCSC Archaeal Genome Browser; The UCSC Archaeal Genome Browser; DOI: 10.25504/FAIRsharing.12yd2z; Last edited: Feb. 22, 2018, 2:45 p.m.; Last accessed: Jun 18 2018 4:32 p.m.


Record updated: Aug. 16, 2016, 7:09 p.m. by The FAIRsharing Team.



Tools

    No tools defined


Access / Retrieve Data

Conditions of Use


Data Versioning

versioning by NCBI RefSeq genome release date No link recorded
access to historical files available on request No link recorded

Data Release

ad-hoc release No link recorded

Data Curation

automated curation No link recorded

Data Access

file download(CSV,txt,tab-delimited) No link recorded
browse http://archaea.ucsc.edu/genomes/



Publications

The UCSC Archaeal Genome Browser.

Schneider KL., Pollard KS., Baertsch R., Pohl A., Lowe TM.,
Nucleic Acids Res. 2006

View Paper (PubMed) View Paper (DOI)

The UCSC Table Browser data retrieval tool.

Karolchik D., Hinrichs AS., Furey TS., Roskin KM., Sugnet CW., Haussler D., Kent WJ.,
Nucleic Acids Res. 2004

View Paper (PubMed) View Paper (DOI)

BLAT--the BLAST-like alignment tool.

Kent WJ.,
Genome Res. 2002

View Paper (PubMed) View Paper (DOI)


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.