The UCSC Archaeal Genome Browser
General Information
The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq entries, with overlays of sequence conservation across multiple species, nucleotide and protein motifs, non-coding RNA predictions, operon predictions, and other types of bioinformatic analyses. In addition, we display available gene expression data (microarray or high-throughput RNA sequencing). Direct contributions or notices of publication of functional genomic data or bioinformatic analyses from archaeal research labs are very welcome.
How to cite this record
FAIRsharing.org: The UCSC Archaeal Genome Browser; The UCSC Archaeal Genome Browser; DOI: https://doi.org/10.25504/FAIRsharing.12yd2z;
Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Feb 19 2019 10:21 a.m.
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Edits to 'https://fairsharing.org/FAIRsharing.12yd2z' by 'The FAIRsharing Team' at 11:02, 21 Nov 2018 (not approved):
'domains' has been modified:
Before:
CRISPR
DNA sequence data
GC content
Gene expression data
Gene functional annotation
Genome map
Insertion sequence
Life Science
Multiple sequence alignment
Non-coding RNA (ncRNA)
Nucleic acid sequence alignment
Operon prediction
Orthologous
Palindromic transcription factor (TF) binding site predictions
Paralogous
Poly T motifs as possible transcription termination signals
Prediction and recognition
Promoter
RNA sequence
Sequence annotation
Transcription factor (TF) binding site prediction
After:
CRISPR
Computational predictions
DNA sequence data
GC content
Gene expression data
Gene functional annotation
Genome map
Insertion sequence
Life Science
Multiple sequence alignment
Non-coding RNA (ncRNA)
Nucleic acid sequence alignment
Operon prediction
Orthologous
Palindromic transcription factor (TF) binding site predictions
Paralogous
Poly T motifs as possible transcription termination signals
Promoter
RNA sequence
Sequence annotation
Transcription factor (TF) binding site prediction
Added:
Computational predictions
Removed:
Prediction and recognition
Edits to 'https://fairsharing.org/FAIRsharing.12yd2z' by 'The FAIRsharing Team' at 10:56, 21 Nov 2018 (not approved):
'domains' has been modified:
Before:
CRISPR
GC content
Gene expression data
Gene functional annotation
Genome map
Insertion sequence
Life Science
Multiple sequence alignment
Non-coding RNA (ncRNA)
Nucleic acid sequence alignment
Operon prediction
Orthologous
Palindromic transcription factor (TF) binding site predictions
Paralogous
Poly T motifs as possible transcription termination signals
Prediction and recognition
Promoter
RNA sequence
Sequence annotation
Transcription factor (TF) binding site prediction
After:
CRISPR
DNA sequence data
GC content
Gene expression data
Gene functional annotation
Genome map
Insertion sequence
Life Science
Multiple sequence alignment
Non-coding RNA (ncRNA)
Nucleic acid sequence alignment
Operon prediction
Orthologous
Palindromic transcription factor (TF) binding site predictions
Paralogous
Poly T motifs as possible transcription termination signals
Prediction and recognition
Promoter
RNA sequence
Sequence annotation
Transcription factor (TF) binding site prediction
Added:
DNA sequence data
Removed:
Access / Retrieve Data
Conditions of Use
Data Versioning
| versioning by NCBI RefSeq genome release date
|
No link recorded |
| access to historical files available on request
|
No link recorded |
Data Release
| ad-hoc release
|
No link recorded |
Data Curation
| automated curation
|
No link recorded |
Data Access
Publications
The UCSC Table Browser data retrieval tool.
Karolchik D., Hinrichs AS., Furey TS., Roskin KM., Sugnet CW., Haussler D., Kent WJ.,
Nucleic Acids Res. 2004
View Paper (PubMed)
View Publication
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Implementing Policies
This record is not implemented by any policy.
Credit
Funds
Maintains
Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA
(University)
Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz, Santa Cruz, CA, USA
University of California, Santa Cruz, CA, USA
(University)
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