databases > DOI:10.25504/FAIRsharing.kkdpxe

ready MetaboLights

Abbreviation:MTBLS

Recommended
General Information
MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and cross-technique and it covers metabolite structures and their reference spectra as well as their biological roles and locations. MetaboLights is the recommended metabolomics repository for a number of leading journals and ELIXIR, the European infrastructure for life science information.

Homepage https://www.ebi.ac.uk/metabolights/

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 2012

Taxonomic range

User-defined Tags





How to cite this record FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 12, 2020, 3:06 p.m.; Last accessed: Feb 28 2020 9:44 p.m.

Publication for citation  MetaboLights: a resource evolving in response to the needs of its scientific community. Haug K,Cochrane K,Nainala VC,Williams M,Chang J,Jayaseelan KV,O'Donovan C; Nucleic Acids Res ; 2019; 10.1093/nar/gkz1019;


This record is maintained by khaug  ORCID

Record updated: Feb. 12, 2020, 3:06 p.m. by The FAIRsharing Team.

Show edit history


In Collections
Metabolomics Standards and Databases
Data Citation Implementation
H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project
ELIXIR Core Data Resources and Deposition Databases

Support

General

contact form Feedback
support email MetaboLights helpdesk
online documentation Help Pages
training Training
twitter @MetaboLights

Additional Information

Contact Claire O'Donovan   ORCID

TeSS training resources 

MetaboLights: Quick tour




Access / Retrieve Data

Conditions of Use

Applies to: Data use Applies to: Database software

Data Versioning

internal versioning for curation No link recorded

Data Release

Continuous release (metadata sharing) http://www.metabolomexchange.org/site/#/search/mtbls
Continuous release (metadata sharing) https://www.omicsdi.org/search?q=(*:*%20AND%20(repository:%20(%22Metab ...
Download (FTP) ftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/
Download https://www.ebi.ac.uk/metabolights/download

Data Curation

Submit Study https://www.ebi.ac.uk/metabolights/presubmit

Data Access

Browse studies https://www.ebi.ac.uk/metabolights/studies
Browse compounds https://www.ebi.ac.uk/metabolights/compounds
Browse species https://www.ebi.ac.uk/metabolights/species
Search https://www.ebi.ac.uk/metabolights/advancedsearch



Publications

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.

Haug K., Salek RM., Conesa P., Hastings J., de Matos P., Rijnbeek M., Mahendraker T., Williams M., Neumann S., Rocca-Serra P., Maguire E., González-Beltrán A., Sansone SA., Griffin JL., Steinbeck C.,
Nucleic Acids Res. 2013

View Paper (PubMed)

The MetaboLights repository: curation challenges in metabolomics

Reza M. Salek, Kenneth Haug, Pablo Conesa, Janna Hastings, Mark Williams, Tejasvi Mahendraker, Eamonn Maguire, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Susanna-Assunta Sansone and Christoph Steinbeck
Database: The Journal of Biological Databases and Curation 2013

View Publication

MetaboLights: towards a new COSMOS of metabolomics data management.

Steinbeck C, Conesa P, Haug K, Mahendraker T, Williams M, Maguire E, Rocca-Serra P, Sansone SA, Salek RM, Griffin JL.
Metabolomics 2013

View Publication

Dissemination of metabolomics results: role of MetaboLights and COSMOS.

Salek RM, Haug K, Steinbeck C
GigaScience 2013

View Publication

MetaboLights: An Open-Access Database Repository for Metabolomics Data.

Kale NS,Haug K,Conesa P,Jayseelan K,Moreno P,Rocca-Serra P,Nainala VC,Spicer RA,Williams M,Li X,Salek RM,Griffin JL,Steinbeck C
Curr Protoc Bioinformatics 2016

View Paper (PubMed) View Publication

Automated assembly of species metabolomes through data submission into a public repository.

Salek RM,Conesa P,Cochrane K,Haug K,Williams M,Kale N,Moreno P,Jayaseelan KV,Macias JR,Nainala VC,Hall RD,Reed LK,Viant MR,O'Donovan C,Steinbeck C
Gigascience 2017

View Paper (PubMed) View Publication

MetaboLights: a resource evolving in response to the needs of its scientific community.

Haug K,Cochrane K,Nainala VC,Williams M,Chang J,Jayaseelan KV,O'Donovan C
Nucleic Acids Res 2019

View Paper (PubMed) View Publication




Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • 1U54GM114833-01 (National Institutes of Health (NIH), Bethesda, MD, USA)

  • 634402 (European Commission Horizon2020 Programme)

  • 654241 (European Commission Horizon2020 Programme)

  • BB/M027635/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • MR/L01632X/1 (Medical Research Council (MRC), London, UK)