databases > DOI:10.25504/FAIRsharing.kkdpxe
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ready MetaboLights

Abbreviation:MTBLS

Recommended
General Information
MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and cross-technique and it covers metabolite structures and their reference spectra as well as their biological roles and locations. MetaboLights is the recommended metabolomics repository for a number of leading journals and ELIXIR, the European infrastructure for life science information.

Homepage https://www.ebi.ac.uk/metabolights/

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 2012

Taxonomic range

User-defined Tags





How to cite this record FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Nov 27 2021 10:55 p.m.

Publication for citation  MetaboLights: a resource evolving in response to the needs of its scientific community. Haug K,Cochrane K,Nainala VC,Williams M,Chang J,Jayaseelan KV,O'Donovan C; Nucleic Acids Res ; 2019; 10.1093/nar/gkz1019;


This record is maintained by khaug  ORCID

Record updated: Feb. 4, 2021, 2:21 p.m. by The FAIRsharing Team.

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In Collections
Metabolomics Standards and Databases
Data Citation Implementation
H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project
EOSC-Life
ELIXIR Core Data Resources and Deposition Databases
RDA Covid-19 WG Resources

Support

General

contact form Feedback
support email MetaboLights helpdesk
online documentation Help Pages
training Training
twitter @MetaboLights

Additional Information

Contact Claire O'Donovan   ORCID

TeSS training resources 

MetaboLights: Quick tour




Access / Retrieve Data

Conditions of Use

Applies to: Data use Applies to: Database software

Data Versioning

internal versioning for curation No link recorded

Data Release

Continuous release (metadata sharing) http://www.metabolomexchange.org/site/#/search/mtbls
Continuous release (metadata sharing) https://www.omicsdi.org/search?q=(*:*%20AND%20(repository:%20(%22Metab ...
Download (FTP) ftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/
Download https://www.ebi.ac.uk/metabolights/download

Data Curation

Submit Study https://www.ebi.ac.uk/metabolights/presubmit

Data Access

Browse studies https://www.ebi.ac.uk/metabolights/studies
Browse compounds https://www.ebi.ac.uk/metabolights/compounds
Browse species https://www.ebi.ac.uk/metabolights/species
Search https://www.ebi.ac.uk/metabolights/advancedsearch



Publications

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.

Haug K., Salek RM., Conesa P., Hastings J., de Matos P., Rijnbeek M., Mahendraker T., Williams M., Neumann S., Rocca-Serra P., Maguire E., González-Beltrán A., Sansone SA., Griffin JL., Steinbeck C.,
Nucleic Acids Res. 2013

View Paper (PubMed)

The MetaboLights repository: curation challenges in metabolomics

Reza M. Salek, Kenneth Haug, Pablo Conesa, Janna Hastings, Mark Williams, Tejasvi Mahendraker, Eamonn Maguire, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Susanna-Assunta Sansone and Christoph Steinbeck
Database: The Journal of Biological Databases and Curation 2013

View Publication

MetaboLights: towards a new COSMOS of metabolomics data management.

Steinbeck C, Conesa P, Haug K, Mahendraker T, Williams M, Maguire E, Rocca-Serra P, Sansone SA, Salek RM, Griffin JL.
Metabolomics 2013

View Publication

Dissemination of metabolomics results: role of MetaboLights and COSMOS.

Salek RM, Haug K, Steinbeck C
GigaScience 2013

View Publication

MetaboLights: An Open-Access Database Repository for Metabolomics Data.

Kale NS,Haug K,Conesa P,Jayseelan K,Moreno P,Rocca-Serra P,Nainala VC,Spicer RA,Williams M,Li X,Salek RM,Griffin JL,Steinbeck C
Curr Protoc Bioinformatics 2016

View Paper (PubMed) View Publication

Automated assembly of species metabolomes through data submission into a public repository.

Salek RM,Conesa P,Cochrane K,Haug K,Williams M,Kale N,Moreno P,Jayaseelan KV,Macias JR,Nainala VC,Hall RD,Reed LK,Viant MR,O'Donovan C,Steinbeck C
Gigascience 2017

View Paper (PubMed) View Publication

MetaboLights: a resource evolving in response to the needs of its scientific community.

Haug K,Cochrane K,Nainala VC,Williams M,Chang J,Jayaseelan KV,O'Donovan C
Nucleic Acids Res 2019

View Paper (PubMed) View Publication




Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • 1U54GM114833-01 (National Institutes of Health (NIH), Bethesda, MD, USA)

  • 634402 (European Commission Horizon2020 Programme)

  • 654241 (European Commission Horizon2020 Programme)

  • BB/M027635/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • MR/L01632X/1 (Medical Research Council (MRC), London, UK)