Edits to 'https://fairsharing.org/FAIRsharing.kkdpxe' by 'The FAIRsharing Team' at 15:06, 12 Feb 2020 (approved):
'organizations' has been modified:
Before:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
European Commission Horizon2020 Programme|https://ec.europa.eu/programmes/horizon2020/|Funds
Medical Research Council (MRC), London, UK|http://www.emouseatlas.org/emap/home.html|Funds
National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK|http://www.sysbiol.cam.ac.uk|Maintains
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Maintains
After:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
European Commission Horizon2020 Programme|https://ec.europa.eu/programmes/horizon2020/|Funds
Medical Research Council (MRC), London, UK|http://www.emouseatlas.org/emap/home.html|Funds
National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK|http://www.sysbiol.cam.ac.uk|Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
Added:
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
Removed:
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Maintains
'supportLinks' has been modified:
Before:
TeSS training|https://tess.elixir-europe.org/materials/metabolights-quick-tour
contact form|https://www.ebi.ac.uk/metabolights/contact
email|metabolights-help@ebi.ac.uk
online documentation|http://www.ebi.ac.uk/metabolights/help
twitter|@MetaboLights
After:
TeSS training|https://tess.elixir-europe.org/materials/metabolights-quick-tour
contact form|https://www.ebi.ac.uk/metabolights/contact
email|metabolights-help@ebi.ac.uk
online documentation|http://www.ebi.ac.uk/metabolights/help
training|https://www.ebi.ac.uk/training/online/topic/metabolomics
twitter|@MetaboLights
Added:
training|https://www.ebi.ac.uk/training/online/topic/metabolomics
Removed:
'description' has been modified:
Before: MetaboLights is a database is a collection of metabolite structures. This resource provides information on the compound origins,the biological roles, locations and concentrations, as well as experimental data from metabolic experiments. The tools and capabilities of this database is firmly routed in collaborative working worldwie with the metabolomics community such as the Metabolomics Society and the associated Metabolomics Standards Initiative (MSI).
After: MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and cross-technique and it covers metabolite structures and their reference spectra as well as their biological roles and locations. MetaboLights is the recommended metabolomics repository for a number of leading journals and ELIXIR, the European infrastructure for life science information.
'countries' has been modified:
Before:
European Union
United Kingdom
After:
Austria
Belgium
Croatia
Czech Republic
Denmark
Finland
France
Germany
Greece
Hungary
Iceland
Israel
Italy
Lithuania
Luxembourg
Malta
Montenegro
Netherlands
Norway
Portugal
Republic of Ireland
Slovakia
Spain
Sweden
Switzerland
United Kingdom
Added:
Austria
Belgium
Croatia
Czech Republic
Denmark
Finland
France
Germany
Greece
Hungary
Iceland
Israel
Italy
Lithuania
Luxembourg
Malta
Montenegro
Netherlands
Norway
Portugal
Republic of Ireland
Slovakia
Spain
Sweden
Switzerland
Removed:
European Union
'licences' has been modified:
Before:
EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Data
After:
EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
Added:
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
Removed:
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Data
'onto_disciplines' has been modified:
Before:
Data Submission, Annotation and Curation
Life Science
Metabolomics
After:
Data Submission, Annotation and Curation
Metabolomics
Structural Biology
Added:
Structural Biology
Removed:
Life Science
'dataProcesses' has been modified:
Before:
Browse studies
Continuous release (metadata sharing)
Continuous release (metadata sharing)
internal versioning for curation
ftp
Download
Browse compounds
Browse species
Submit
Login
After:
Browse studies
Continuous release (metadata sharing)
Continuous release (metadata sharing)
internal versioning for curation
Download (FTP)
Download
Browse compounds
Browse species
Submit Study
Search
Added:
Download (FTP)
Submit Study
Search
Removed:
ftp
Submit
Login
'publications' has been modified:
Before:
MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.|Haug K., Salek RM., Conesa P., Hastings J., de Matos P., Rijnbeek M., Mahendraker T., Williams M., Neumann S., Rocca-Serra P., Maguire E., Gonzlez-Beltrn A., Sansone SA., Griffin JL., Steinbeck C., |Nucleic Acids Res.|2013
The MetaboLights repository: curation challenges in metabolomics|Reza M. Salek, Kenneth Haug, Pablo Conesa, Janna Hastings, Mark Williams, Tejasvi Mahendraker, Eamonn Maguire, Alejandra N. Gonzlez-Beltrn, Philippe Rocca-Serra, Susanna-Assunta Sansone and Christoph Steinbeck| Database: The Journal of Biological Databases and Curation|2013
MetaboLights: towards a new COSMOS of metabolomics data management.|Steinbeck C, Conesa P, Haug K, Mahendraker T, Williams M, Maguire E, Rocca-Serra P, Sansone SA, Salek RM, Griffin JL.|Metabolomics|2013
Dissemination of metabolomics results: role of MetaboLights and COSMOS.|Salek RM, Haug K, Steinbeck C|GigaScience |2013
MetaboLights: An Open-Access Database Repository for Metabolomics Data.|Kale NS,Haug K,Conesa P,Jayseelan K,Moreno P,Rocca-Serra P,Nainala VC,Spicer RA,Williams M,Li X,Salek RM,Griffin JL,Steinbeck C|Curr Protoc Bioinformatics|2016
Automated assembly of species metabolomes through data submission into a public repository.|Salek RM,Conesa P,Cochrane K,Haug K,Williams M,Kale N,Moreno P,Jayaseelan KV,Macias JR,Nainala VC,Hall RD,Reed LK,Viant MR,O'Donovan C,Steinbeck C|Gigascience|2017
After:
MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.|Haug K., Salek RM., Conesa P., Hastings J., de Matos P., Rijnbeek M., Mahendraker T., Williams M., Neumann S., Rocca-Serra P., Maguire E., Gonzlez-Beltrn A., Sansone SA., Griffin JL., Steinbeck C., |Nucleic Acids Res.|2013
The MetaboLights repository: curation challenges in metabolomics|Reza M. Salek, Kenneth Haug, Pablo Conesa, Janna Hastings, Mark Williams, Tejasvi Mahendraker, Eamonn Maguire, Alejandra N. Gonzlez-Beltrn, Philippe Rocca-Serra, Susanna-Assunta Sansone and Christoph Steinbeck| Database: The Journal of Biological Databases and Curation|2013
MetaboLights: towards a new COSMOS of metabolomics data management.|Steinbeck C, Conesa P, Haug K, Mahendraker T, Williams M, Maguire E, Rocca-Serra P, Sansone SA, Salek RM, Griffin JL.|Metabolomics|2013
Dissemination of metabolomics results: role of MetaboLights and COSMOS.|Salek RM, Haug K, Steinbeck C|GigaScience |2013
MetaboLights: An Open-Access Database Repository for Metabolomics Data.|Kale NS,Haug K,Conesa P,Jayseelan K,Moreno P,Rocca-Serra P,Nainala VC,Spicer RA,Williams M,Li X,Salek RM,Griffin JL,Steinbeck C|Curr Protoc Bioinformatics|2016
Automated assembly of species metabolomes through data submission into a public repository.|Salek RM,Conesa P,Cochrane K,Haug K,Williams M,Kale N,Moreno P,Jayaseelan KV,Macias JR,Nainala VC,Hall RD,Reed LK,Viant MR,O'Donovan C,Steinbeck C|Gigascience|2017
MetaboLights: a resource evolving in response to the needs of its scientific community.|Haug K,Cochrane K,Nainala VC,Williams M,Chang J,Jayaseelan KV,O'Donovan C|Nucleic Acids Res|2019
Added:
MetaboLights: a resource evolving in response to the needs of its scientific community.|Haug K,Cochrane K,Nainala VC,Williams M,Chang J,Jayaseelan KV,O'Donovan C|Nucleic Acids Res|2019
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.kkdpxe' by 'khaug' at 09:48, 10 Apr 2019 (approved):
'countries' has been modified:
Before:
Belgium
European Union
France
Germany
United Kingdom
United States
After:
European Union
United Kingdom
Added:
Removed:
Belgium
France
Germany
United States
Edits to 'https://fairsharing.org/FAIRsharing.kkdpxe' by 'The FAIRsharing Team' at 18:35, 11 Mar 2019 (approved):
'onto_disciplines' has been modified:
Before:
Life Sciences
Metabolomics
After:
Data Submission, Annotation and Curation
Life Sciences
Metabolomics
Added:
Data Submission, Annotation and Curation
Removed:
'supportLinks' has been modified:
Before:
TeSS training|https://tess.elixir-europe.org/materials/metabolights-quick-tour
email|metabolights-help@ebi.ac.uk
online documentation|http://www.ebi.ac.uk/metabolights/help
twitter|@MetaboLights
After:
TeSS training|https://tess.elixir-europe.org/materials/metabolights-quick-tour
contact form|https://www.ebi.ac.uk/metabolights/contact
email|metabolights-help@ebi.ac.uk
online documentation|http://www.ebi.ac.uk/metabolights/help
twitter|@MetaboLights
Added:
contact form|https://www.ebi.ac.uk/metabolights/contact
Removed:
'dataProcesses' has been modified:
Before:
Continuous release (live database)
Continuous release (metadata sharing)
Continuous release (metadata sharing)
internal versioning for curation
ftp
web interface
After:
Browse studies
Continuous release (metadata sharing)
Continuous release (metadata sharing)
internal versioning for curation
ftp
Download
Browse compounds
Browse species
Submit
Login
Added:
Browse studies
Download
Browse compounds
Browse species
Submit
Login
Removed:
Continuous release (live database)
web interface
'onto_domains' has been modified:
Before:
Mass spectrometry spectra
lipid
metabolite
nuclear magnetic resonance spectroscopy
publication
After:
Biocuration
Biospecimen
Chemical formula
Chemical structure image
Mass spectrometry spectra
Pathway or network prediction
Sample annotation
Validation
assay
lipid
metabolite
nuclear magnetic resonance spectroscopy
protocol
publication
Added:
Biocuration
Biospecimen
Chemical formula
Chemical structure image
Pathway or network prediction
Sample annotation
Validation
assay
protocol
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.kkdpxe' by 'khaug' at 22:11, 02 Aug 2018 (approved):
'organizations' has been modified:
Before:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
Cambridge Systems Biology Centre, University of Cambridge, Cambridge, United Kingdom|http://www.sysbiol.cam.ac.uk|Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom|https://www.ebi.ac.uk/|Maintains
Medical Research Council (MRC), London, United Kingdom|http://www.mrc.ac.uk|Funds
US National Institutes of Health (NIH)|https://www.nih.gov/|Funds
European Commission Horizon2020 Programme|https://ec.europa.eu/programmes/horizon2020/|Funds
After:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
Medical Research Council (MRC), London, United Kingdom|http://www.mrc.ac.uk|Funds
US National Institutes of Health (NIH)|https://www.nih.gov/|Funds
European Commission Horizon2020 Programme|https://ec.europa.eu/programmes/horizon2020/|Funds
Cambridge Systems Biology Centre, University of Cambridge, Cambridge, United Kingdom|http://www.sysbiol.cam.ac.uk|Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom|https://www.ebi.ac.uk/|Maintains
Added:
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom|https://www.ebi.ac.uk/|Maintains
Removed:
European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom|https://www.ebi.ac.uk/|Maintains
Edits to 'https://fairsharing.org/FAIRsharing.kkdpxe' by 'The FAIRsharing Team' at 21:54, 02 Aug 2018 (approved):
'organizations' has been modified:
Before:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|http://www.bbsrc.ac.uk/|Funds
Cambridge Systems Biology Centre, University of Cambridge, Cambridge, United Kingdom|http://www.sysbiol.cam.ac.uk|Maintains
After:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
Cambridge Systems Biology Centre, University of Cambridge, Cambridge, United Kingdom|http://www.sysbiol.cam.ac.uk|Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom|https://www.ebi.ac.uk/|Maintains
Medical Research Council (MRC), London, United Kingdom|http://www.mrc.ac.uk|Funds
US National Institutes of Health (NIH)|https://www.nih.gov/|Funds
European Commission Horizon2020 Programme|https://ec.europa.eu/programmes/horizon2020/|Funds
Added:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom|https://www.ebi.ac.uk/|Maintains
Medical Research Council (MRC), London, United Kingdom|http://www.mrc.ac.uk|Funds
US National Institutes of Health (NIH)|https://www.nih.gov/|Funds
European Commission Horizon2020 Programme|https://ec.europa.eu/programmes/horizon2020/|Funds
Removed:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|http://www.bbsrc.ac.uk/|Funds
'standardsImplemented' has been modified:
Before:
Chemical Entities of Biological Interest
HUPO PSI Mass Spectrometry Controlled Vocabulary
Investigation Study Assay Tabular
Nuclear Magnetic Resonance Controlled Vocabulary
Core Information for Metabolomics Reporting
OmicsDI XML format
Nuclear Magnetic Resonance Markup Language
After:
Chemical Entities of Biological Interest
BRENDA tissue / enzyme source
HUPO PSI Mass Spectrometry Controlled Vocabulary
Investigation Study Assay Tabular
Nuclear Magnetic Resonance Controlled Vocabulary
Core Information for Metabolomics Reporting
OmicsDI XML format
Nuclear Magnetic Resonance Markup Language
Added:
BRENDA tissue / enzyme source
Removed:
'related_databases' has been modified:
Before:
Rhea
WikiPathways
Omics Discovery Index
After:
Rhea
WikiPathways
BRENDA
Omics Discovery Index
Added:
BRENDA
Removed:
'description' has been modified:
Before: MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. We offer user-submission tools and have strong reporting capabilities. We will utilise and further develop de-facto standard formats where various components are encapsulated, such as the encoded spectral and chromatographic data, and associated information about the chemical structure, as well as metadata describing assays and the study as a whole. We are dedicated to collaborate closely with major parties in world-wide metabolomics communities, such as the Metabolomics Society and the associated Metabolomics Standards Initiative (MSI).
After: MetaboLights is a database is a collection of metabolite structures. This resource provides information on the compound origins,the biological roles, locations and concentrations, as well as experimental data from metabolic experiments. The tools and capabilities of this database is firmly routed in collaborative working worldwie with the metabolomics community such as the Metabolomics Society and the associated Metabolomics Standards Initiative (MSI).
'countries' has been modified:
Before:
European Union
United Kingdom
After:
Belgium
European Union
France
Germany
United Kingdom
United States
Added:
Belgium
France
Germany
United States
Removed:
'licences' has been modified:
Before:
After:
EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Data
Added:
EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Data
Removed:
'grants' has been modified:
Before:
BB/I000933/1
BB/L024152/1
After:
1U54GM114833-01
634402
654241
BB/M027635/1
MR/L01632X/1
Added:
1U54GM114833-01
634402
654241
BB/M027635/1
MR/L01632X/1
Removed:
BB/I000933/1
BB/L024152/1
'publications' has been modified:
Before:
MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.|Haug K., Salek RM., Conesa P., Hastings J., de Matos P., Rijnbeek M., Mahendraker T., Williams M., Neumann S., Rocca-Serra P., Maguire E., Gonzlez-Beltrn A., Sansone SA., Griffin JL., Steinbeck C., |Nucleic Acids Res.|2013
The MetaboLights repository: curation challenges in metabolomics|Reza M. Salek, Kenneth Haug, Pablo Conesa, Janna Hastings, Mark Williams, Tejasvi Mahendraker, Eamonn Maguire, Alejandra N. Gonzlez-Beltrn, Philippe Rocca-Serra, Susanna-Assunta Sansone and Christoph Steinbeck| Database: The Journal of Biological Databases and Curation|2013
MetaboLights: towards a new COSMOS of metabolomics data management.|Steinbeck C, Conesa P, Haug K, Mahendraker T, Williams M, Maguire E, Rocca-Serra P, Sansone SA, Salek RM, Griffin JL.|Metabolomics|2013
Dissemination of metabolomics results: role of MetaboLights and COSMOS.|Salek RM, Haug K, Steinbeck C|GigaScience |2013
After:
MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.|Haug K., Salek RM., Conesa P., Hastings J., de Matos P., Rijnbeek M., Mahendraker T., Williams M., Neumann S., Rocca-Serra P., Maguire E., Gonzlez-Beltrn A., Sansone SA., Griffin JL., Steinbeck C., |Nucleic Acids Res.|2013
The MetaboLights repository: curation challenges in metabolomics|Reza M. Salek, Kenneth Haug, Pablo Conesa, Janna Hastings, Mark Williams, Tejasvi Mahendraker, Eamonn Maguire, Alejandra N. Gonzlez-Beltrn, Philippe Rocca-Serra, Susanna-Assunta Sansone and Christoph Steinbeck| Database: The Journal of Biological Databases and Curation|2013
MetaboLights: towards a new COSMOS of metabolomics data management.|Steinbeck C, Conesa P, Haug K, Mahendraker T, Williams M, Maguire E, Rocca-Serra P, Sansone SA, Salek RM, Griffin JL.|Metabolomics|2013
Dissemination of metabolomics results: role of MetaboLights and COSMOS.|Salek RM, Haug K, Steinbeck C|GigaScience |2013
MetaboLights: An Open-Access Database Repository for Metabolomics Data.|Kale NS,Haug K,Conesa P,Jayseelan K,Moreno P,Rocca-Serra P,Nainala VC,Spicer RA,Williams M,Li X,Salek RM,Griffin JL,Steinbeck C|Curr Protoc Bioinformatics|2016
Automated assembly of species metabolomes through data submission into a public repository.|Salek RM,Conesa P,Cochrane K,Haug K,Williams M,Kale N,Moreno P,Jayaseelan KV,Macias JR,Nainala VC,Hall RD,Reed LK,Viant MR,O'Donovan C,Steinbeck C|Gigascience|2017
Added:
MetaboLights: An Open-Access Database Repository for Metabolomics Data.|Kale NS,Haug K,Conesa P,Jayseelan K,Moreno P,Rocca-Serra P,Nainala VC,Spicer RA,Williams M,Li X,Salek RM,Griffin JL,Steinbeck C|Curr Protoc Bioinformatics|2016
Automated assembly of species metabolomes through data submission into a public repository.|Salek RM,Conesa P,Cochrane K,Haug K,Williams M,Kale N,Moreno P,Jayaseelan KV,Macias JR,Nainala VC,Hall RD,Reed LK,Viant MR,O'Donovan C,Steinbeck C|Gigascience|2017
Removed:
'tools' has been modified:
Before:
ISAcreator-MetaboLights Bundle|1.7|ftp://ftp.ebi.ac.uk/pub/databases/metabolights/submissionTool/ISAcreatorMetaboLights.zip
After:
ISAcreator-MetaboLights Bundle|1.7|ftp://ftp.ebi.ac.uk/pub/databases/metabolights/submissionTool/ISAcreatorMetaboLights.zip
PhenoMeNal||http://phenomenal-h2020.eu/home/
Added:
PhenoMeNal||http://phenomenal-h2020.eu/home/
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.kkdpxe' by 'khaug' at 17:09, 12 Mar 2018 (approved):
'homepage' has been modified:
Before: http://www.ebi.ac.uk/metabolights/
After: https://www.ebi.ac.uk/metabolights/
Edits to 'https://fairsharing.org/FAIRsharing.kkdpxe' by 'khaug' at 11:06, 12 Mar 2018 (approved):
'contactName' has been modified:
Before:
Reza Salek
After:
Claire O'Donovan
Added:
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.kkdpxe' by 'The FAIRsharing Team' at 15:21, 12 Feb 2018 (approved):
'supportLinks' has been modified:
Before:
http://www.ebi.ac.uk/metabolights/help
http://tess-elixir.csc.fi/dataset/european-bioinformatics-institute-ebi-metabolights_quick_tour
@MetaboLights
After:
http://www.ebi.ac.uk/metabolights/help
https://tess.elixir-europe.org/materials/metabolights-quick-tour
@MetaboLights
Added:
https://tess.elixir-europe.org/materials/metabolights-quick-tour
Removed:
http://tess-elixir.csc.fi/dataset/european-bioinformatics-institute-ebi-metabolights_quick_tour
Edits to 'https://fairsharing.org/FAIRsharing.kkdpxe' by 'The FAIRsharing Team' at 12:05, 12 Feb 2018 (approved):
'supportLinks' has been modified:
Before:
https://tess.elixir-europe.org/materials/metabolights-quick-tour
http://www.ebi.ac.uk/metabolights/help
http://tess-elixir.csc.fi/dataset/european-bioinformatics-institute-ebi-metabolights_quick_tour
@MetaboLights
After:
http://www.ebi.ac.uk/metabolights/help
http://tess-elixir.csc.fi/dataset/european-bioinformatics-institute-ebi-metabolights_quick_tour
@MetaboLights
Added:
Removed:
https://tess.elixir-europe.org/materials/metabolights-quick-tour