Comparative Toxicogenomics Database
Abbreviation:CTD
Homepage http://ctdbase.org/
Developed in United States
Created in 2004
Taxonomic range
Scope and data types
How to cite this record FAIRsharing.org: CTD; Comparative Toxicogenomics Database; DOI: 10.25504/FAIRsharing.h3tjtr; Last edited: Feb. 22, 2018, 2:46 p.m.; Last accessed: Jun 24 2018 8:18 a.m.
Record updated: Aug. 17, 2016, 7:59 p.m. by The FAIRsharing Team.
| FAQ | http://ctdbase.org/help/faq/ |
| contact form | http://ctdbase.org/help/contact.go |
| Mailing List | None |
| online documentation | http://ctdbase.org/help/ |
| training | http://ctdbase.org/help/tutorials.jsp |
Additional Information
| Contact | Allan Peter Davis |
| Search | http://ctdbase.org/search/ |
| MyGeneVenn | http://ctdbase.org/tools/myGeneVenn.go |
| MyVenn | http://ctdbase.org/tools/myVenn.go |
| VennViewer | http://ctdbase.org/tools/vennViewer.go |
| Batch Query | http://ctdbase.org/tools/batchQuery.go |
| Set Analyzer | http://ctdbase.org/tools/analyzer.go |
Conditions of Use
Data Versioning
| data download | http://ctdbase.org/downloads/ |
Data Release
| monthly release | http://ctdbase.org/about/dataStatus.go |
Data Curation
| manual curation | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3176677/?report=classic |
| data import | http://ctdbase.org/about/dataStatus.go |
| data integration | http://ctdbase.org/about/dataStatus.go |
MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.
Davis AP., Wiegers TC., Rosenstein MC., Mattingly CJ.,
Database (Oxford) 2012
The Comparative Toxicogenomics Database: update 2013
Davis AP, Murphy CG, Johnson R, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Rosenstein MC, Wiegers TC, Mattingly CJ.
Nucleic Acids Research 2013
Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database
Davis AP, Johnson RJ, Lennon-Hopkins K, Sciaky D, Rosenstein MC, Wiegers TC, Mattingly CJ
Database (Oxford) 2012
A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-disease and drug-phenotype interactions
Davis AP, Wiegers TC, Roberts PM, King BL, Lay JM, Lennon-Hopkins K, Sciaky D, Johnson R, Keating H, Greene N, Hernandez R, McConnell KJ, Enayetallah AE, Mattingly CJ.
Database (Oxford) 2013
Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation at the Comparative Toxicogenomics Database
Davis AP, Wiegers TC, Johnson RJ, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, Murphy CG, Mattingly CJ.
PLoS One 2013
The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database
Davis AP, Wiegers TC, Rosenstein MC, Murphy CG, Mattingly CJ.
Database (Oxford) 2011
DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD
Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ.
Bioinformation 2011
GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic profiles
Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Hampton TH, Mattingly CJ.
Bioinformation 2009
The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study
Davis AP, Murphy CG, Rosenstein MC, Wiegers TC, Mattingly CJ
BMC Med Genomics 2008
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
No syntax standards defined
This record is not implemented by any policy.
Record Maintainer
This record is maintained by apdavis
Funds
National Center for Research Resources, National Institute of Health (Government body)
The National Institute of Environmental Health Sciences, NIH (Government body)
The National Institute of Environmental Health Sciences, NIH, USA
Maintains
Grant Number(s)
