Databases > biodbcore-000191

ready GlycoProtDB

Abbreviation:GPDB

General Information
GlycoProtDB is a glycoprotein database providing information of Asn (N)-glycosylated proteins and their glycosylated site(s), which were constructed by employing a bottom-up strategy using actual glycopeptide sequences identified by LC/MS-based glycoproteomic technologies. The database is searchable using gene ID, gene name, and its description (protein name) as query. Each data sheet of glycproteins is based on a single amino acid sequence in Wormpep database for C.elegans and NCBI Refseq database for mouse. The sheet presents actually detected N-glycosylation site(s) which are displayed each capturing methods of glycopeptide subset, e.g., lectins Concanavalin A, wheat germ agglutinin (WGA), or HILIC (hydrophilic interaction chromatography), as well as potential N-glycosylation sites (NX[STC], X≠P). Protein sequences, which have common glycopeptide sequence(s), are linked each other.



This record is maintained by Hiro

Record updated: Dec. 7, 2016, 10:21 a.m. by The FAIRsharing Team.


Support

No support information provided.

Additional Information


Tools

    No tools defined


Access / Retrieve Data


Connectivity
Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.



Publications

Large-scale Identification of N-Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB

Kaji H. et al
Journal of Proteome 2012

View Paper (PubMed) View Paper (DOI)