ready cis-Regulatory Element Database

Abbreviation:cisRED

General Information
The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, similarity, clustering, co-occurrence and coexpression calculations. Sequence inputs include low-coverage genome sequence data and ENCODE data.



Record updated: Sept. 27, 2016, 5:58 p.m. by The FAIRsharing Team.



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cisRED: a database system for genome-scale computational discovery of regulatory elements.

Robertson G., Bilenky M., Lin K., He A., Yuen W., Dagpinar M., Varhol R., Teague K., Griffith OL., Zhang X., Pan Y., Hassel M., Sleumer MC., Pan W., Pleasance ED., Chuang M., Hao H., Li YY., Robertson N., Fjell C., Li B., Montgomery SB., Astakhova T., Zhou J., Sander J., Siddiqui AS., Jones SJ.,
Nucleic Acids Res. 2006

View Paper (PubMed)