databases > DOI:10.25504/FAIRsharing.x6d6sx

ready Bgee DataBase for Gene Expression Evolution

Abbreviation:Bgee

General Information
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.

Homepage http://bgee.org

Developed in Switzerland

Created in 2008





How to cite this record FAIRsharing.org: Bgee; Bgee DataBase for Gene Expression Evolution; DOI: https://doi.org/10.25504/FAIRsharing.x6d6sx; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Feb 16 2019 9:53 p.m.


This record is maintained by marcrr  ORCID

Record updated: Aug. 20, 2016, 9:42 p.m. by The FAIRsharing Team.



In Collections
ELIXIR Core Data and Data Deposition Resources

Support

General

blog https://bgeedb.wordpress.com/
forum https://github.com/BgeeDB/
online documentation http://bgee.unil.ch/bgee/bgee?page=docum ...
online documentation http://bgee.org/?page=doc
twitter @Bgeedb

Additional Information

Contact Bgee@isb-sib.ch

Tools
TopAnat - Gene Expression Enrichment http://bgee.org/?page=top_anat#/

Access / Retrieve Data

Conditions of Use


Data Access

Download http://bgee.unil.ch/bgee/bgee?page=download
search http://bgee.unil.ch/bgee/bgee?page=expression&action=easy_search



Publications

Uncovering hidden duplicated content in public transcriptomics data.

Rosikiewicz M., Comte A., Niknejad A., Robinson-Rechavi M., Bastian FB.,
Database (Oxford) 2013

View Paper (PubMed) View Publication

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

Haendel MA,Balhoff JP,Bastian FB,Blackburn DC,Blake JA,Bradford Y,Comte A,Dahdul WM,Dececchi TA,Druzinsky RE,Hayamizu TF,Ibrahim N,Lewis SE,Mabee PM,Niknejad A,Robinson-Rechavi M,Sereno PC,Mungall CJ
J Biomed Semantics 2014

View Paper (PubMed) View Publication

vHOG, a multispecies vertebrate ontology of homologous organs groups.

Niknejad A,Comte A,Parmentier G,Roux J,Bastian FB,Robinson-Rechavi M
Bioinformatics 2012

View Paper (PubMed) View Publication

Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species

Frederic Bastian, Gilles Parmentier, Julien Roux, Sebastien Moretti, Vincent Laudet, Marc Robinson-Rechavi
Lecture Notes in Computer Science 2008

View Publication

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