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GreenPhylDB: A phylogenomic database for plant comparative genomics

Abbreviation:GreenPhyl

General Information

GreenPhylDB comprises 37 full genomes from the major phylum of plant evolution. Clustering of these genomes was performed to define a consistent and extensive set of homeomorphic plant families.

Homepage http://www.greenphyl.org

Countries that developed this resource France

Created in 2007

Taxonomic range

Viridiplantae

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: GreenPhyl; GreenPhylDB: A phylogenomic database for plant comparative genomics; DOI: https://doi.org/10.25504/FAIRsharing.j98570; Last edited: April 26, 2021, 8:43 a.m.; Last accessed: Nov 28 2021 3:15 a.m.

This record is maintained by mrouard ORCID

Record updated: April 20, 2021, 2:37 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.j98570' by 'The FAIRsharing Team' at 14:37, 20 Apr 2021 (approved):

	'licences' has been modified:
		Before:
			GreenPhyl Terms of Service|http://www.greenphyl.org/cgi-bin/tos.cgi|Data
			Publicly available data||Data
		After:
			GreenPhyl Terms of Service|http://www.greenphyl.org/cgi-bin/tos.cgi|Data
		Added:
		Removed:
			Publicly available data||Data

	'miriam_id' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.j98570' by 'The FAIRsharing Team' at 13:50, 08 Nov 2016 (approved):

	'shortname' has been modified:
		Before: GreenPhylDB or GreenPhyl  
		After: GreenPhyl

Edits to 'https://fairsharing.org/FAIRsharing.j98570' by 'mrouard' at 10:06, 04 Nov 2016 (approved):

	'shortname' has been modified:
		Before: GreenPhylDB
		After: GreenPhylDB or GreenPhyl

Support

General

FAQ	http://www.greenphyl.org/cgi-bin/documen ...
online documentation	http://www.greenphyl.org/cgi-bin/documen ...
online documentation	http://www.greenphyl.org/cgi-bin/documen ...

Additional Information

Contact

Mathieu Rouard

Tools

BLAST	http://www.greenphyl.org/cgi-bin/blast.cgi
search	http://www.greenphyl.org/cgi-bin/quick_search.cgi
TreePattern	http://www.greenphyl.org/cgi-bin/treepattern.cgi
Interpro domain search	http://www.greenphyl.org/cgi-bin/ipr2genomes.cgi
browse	http://www.greenphyl.org/cgi-bin/families.cgi?p=list&type=validated
advanced search	http://www.greenphyl.org/cgi-bin/search_families.cgi

Access / Retrieve Data

Conditions of Use

Applies to: Data use

GreenPhyl Terms of Service

Data Release

Genome source

http://www.greenphyl.org/cgi-bin/documentation.cgi?page=datasource

Data Curation

Curated Gene families

http://www.greenphyl.org/cgi-bin/custom_families.cgi?p=list&no_gp=1&li ...

Other Web Services

RDF access by gene family

http://www.greenphyl.org/cgi-bin/rdf.cgi?p=families&with_sequences=1&a ...

Publications

GreenPhylDB v2.0: comparative and functional genomics in plants.

Rouard M., Guignon V., Aluome C., Laporte MA., Droc G., Walde C., Zmasek CM., Périn C., Conte MG.,
Nucleic Acids Res. 2011

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Gene Ontology

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by mrouard ORCID

Maintains

International Cooperation Center for Agricultural Research for Development (CIRAD), France (Research institute)
Bioversity International, Rome, Italy (Consortium)
Generation Challenge Programme, Mexico (Consortium)
South Green

GreenPhylDB: A phylogenomic database for plant comparative genomics

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