ready Gramene, a comparative mapping resource for grains


General Information
Gramene's purpose is to provide added value to data sets available within the public sector, which will facilitate researchers' ability to understand the grass genomes and take advantage of genomic sequence known in one species for identifying and understanding corresponding genes, pathways and phenotypes in other grass species.

Record updated: Jan. 22, 2018, 2:51 p.m. by The FAIRsharing Team.


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Conditions of Use

Applies to: General

Data Access

REST Web Services

Other Web Services


Gramene database in 2010: updates and extensions.

Youens-Clark K., Buckler E., Casstevens T., Chen C., Declerck G., Derwent P., Dharmawardhana P., Jaiswal P., Kersey P., Karthikeyan AS., Lu J., McCouch SR., Ren L., Spooner W., Stein JC., Thomason J., Wei S., Ware D.,
Nucleic Acids Res. 2011

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Gramene: a growing plant comparative genomics resource.

Liang C., Jaiswal P., Hebbard C., Avraham S., Buckler ES., Casstevens T., Hurwitz B., McCouch S., Ni J., Pujar A., Ravenscroft D., Ren L., Spooner W., Tecle I., Thomason J., Tung CW., Wei X., Yap I., Youens-Clark K., Ware D., Stein L.,
Nucleic Acids Res. 2008

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Gramene: a resource for comparative grass genomics.

Ware D., Jaiswal P., Ni J., Pan X., Chang K., Clark K., Teytelman L., Schmidt S., Zhao W., Cartinhour S., McCouch S., Stein L.,
Nucleic Acids Res. 2002

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Gramene 2018: unifying comparative genomics and pathway resources for plant research.

Tello-Ruiz MK,Naithani S,Stein JC,Gupta P,Campbell M,Olson A,Wei S,Preece J,Geniza MJ,Jiao Y,Lee YK,Wang B,Mulvaney J,Chougule K,Elser J,Al-Bader N,Kumari S,Thomason J,Kumar V,Bolser DM,Naamati G,Tapanari E,Fonseca N,Huerta L,Iqbal H,Keays M,Munoz-Pomer Fuentes A,Tang A,Fabregat A,D'Eustachio P,Weiser J,Stein LD,Petryszak R,Papatheodorou I,Kersey PJ,Lockhart P,Taylor C,Jaiswal P,Ware D
Nucleic Acids Res 2017

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Gramene Database: Navigating Plant Comparative Genomics Resources.

Gupta P,Naithani S,Tello-Ruiz MK,Chougule K,D'Eustachio P,Fabregat A,Jiao Y,Keays M,Lee YK,Kumari S,Mulvaney J,Olson A,Preece J,Stein J,Wei S,Weiser J,Huerta L,Petryszak R,Kersey P,Stein LD,Ware D,Jaiswal P
Curr Plant Biol 2017

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Gramene 2016: comparative plant genomics and pathway resources.

Tello-Ruiz MK,Stein J,Wei S,Preece J,Olson A,Naithani S,Amarasinghe V,Dharmawardhana P,Jiao Y,Mulvaney J,Kumari S,Chougule K,Elser J,Wang B,Thomason J,Bolser DM,Kerhornou A,Walts B,Fonseca NA,Huerta L,Keays M,Tang YA,Parkinson H,Fabregat A,McKay S,Weiser J,D'Eustachio P,Stein L,Petryszak R,Kersey PJ,Jaiswal P,Ware D
Nucleic Acids Res 2015

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Grant Number(s)

  • 00-52100-9622 (US Department of Agriculture - Agricultural Research Service (USDA-ARS))

  • 0321685 (National Science Foundation)

  • 0703908 (National Science Foundation)

  • 0851652 (National Science Foundation)

  • 58-1907-0-041 (US Department of Agriculture - Agricultural Research Service (USDA-ARS))

  • 58-1907-0-041 (US Department of Agriculture - Agricultural Research Service (USDA-ARS))