databases > DOI:10.25504/FAIRsharing.7hxxc4

ready PhylomeDB

General Information
PhylomeDB is a public database for complete catalogs of gene phylogenies (phylomes). Researchers are able to use this resource to visualise the history of genes with the available phylogentic trees and multiple sequence alignments.

Homepage http://phylomedb.org

Countries that developed this resource Spain

Created in 2007

Taxonomic range





How to cite this record FAIRsharing.org: PhylomeDB; PhylomeDB; DOI: https://doi.org/10.25504/FAIRsharing.7hxxc4; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 27 2021 10:40 p.m.


This record is maintained by jhcepas  and LaiaCarrete

Record updated: Sept. 29, 2016, 11:37 a.m. by The FAIRsharing Team.

Show edit history


Support

General

FAQ http://phylomedb.org/?q=faq
help http://phylomedb.org/?q=help
twitter @phylomedb

Additional Information

Contact Toni Gabaldon


Access / Retrieve Data

Conditions of Use

Applies to: Data use
  • Publicly available data

Data Access

Download ftp://phylomedb.org/phylomedb/



Publications

PhylomeDB: a database for genome-wide collections of gene phylogenies.

Huerta-Cepas J., Bueno A., Dopazo J., Gabaldón T.,
Nucleic Acids Res. 2008

View Paper (PubMed)

PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.

Huerta-Cepas J, Capella-Gutierrez S, Pryszcz LP, Denisov I, Kormes D, Marcet-Houben M, Gabaldón T. - See more at: http://www.biosharing.org/biodbcore-000611#sthash.SMMBBe07.dpuf
Nucleic Acids Res. 2010

View Paper (PubMed)

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome.

Huerta-Cepas J,Capella-Gutierrez S,Pryszcz LP,Marcet-Houben M,Gabaldon T
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • BIO2012-37161 (Spanish Ministry of Economy and Competitiveness (MINECO))

  • ERC-2012-StG-310325 (The European Research Council (ERC))

  • FP/2007-2013/ERC (The European Research Council (ERC))

  • NPRP 5-298-3-086 (Qatar National Research Fund)