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ready PhylomeDB

General Information
PhylomeDB is a public database for complete catalogs of gene phylogenies (phylomes). Researchers are able to use this resource to visualise the history of genes with the available phylogentic trees and multiple sequence alignments.


Countries that developed this resource Spain

Created in 2007

Taxonomic range

How to cite this record PhylomeDB; PhylomeDB; DOI:; Last edited: April 26, 2021, 9:30 a.m.; Last accessed: Jan 21 2022 11:30 a.m.

This record is maintained by LaiaCarrete  and jhcepas

Record updated: April 20, 2021, 2:39 p.m. by The FAIRsharing Team.

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Conditions of Use

Data Access


PhylomeDB: a database for genome-wide collections of gene phylogenies.

Huerta-Cepas J., Bueno A., Dopazo J., Gabaldón T.,
Nucleic Acids Res. 2008

View Paper (PubMed)

PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.

Huerta-Cepas J, Capella-Gutierrez S, Pryszcz LP, Denisov I, Kormes D, Marcet-Houben M, Gabaldón T. - See more at:
Nucleic Acids Res. 2010

View Paper (PubMed)

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome.

Huerta-Cepas J,Capella-Gutierrez S,Pryszcz LP,Marcet-Houben M,Gabaldon T
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

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Record Maintainer



Grant Number(s)

  • BIO2012-37161 (Spanish Ministry of Economy and Competitiveness (MINECO))

  • ERC-2012-StG-310325 (The European Research Council (ERC))

  • FP/2007-2013/ERC (The European Research Council (ERC))

  • NPRP 5-298-3-086 (Qatar National Research Fund)