Eukaryotic Pathogen Database Resources
Abbreviation:EuPathDB
Homepage https://eupathdb.org/eupathdb/
Countries that developed this resource Uganda , United Kingdom , United States
Taxonomic range
Knowledge Domains
Subjects
In the following recommendations:
How to cite this record FAIRsharing.org: EuPathDB; Eukaryotic Pathogen Database Resources; DOI: https://doi.org/10.25504/FAIRsharing.f94905; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Sep 20 2019 6:25 a.m.
Record updated: Dec. 19, 2018, 1:10 p.m. by The FAIRsharing Team.
| contact form | https://eupathdb.org/eupathdb/app/contac ... |
| help | YouTube Video Tutorials channel |
| online documentation | About Us |
| @eupathdb |
Additional Information
| Contact | Christian J. Stoeckert Jr. |
Conditions of Use
Data Access
| Sequence Retrieval and Download | http://eupathdb.org/eupathdb/srt.jsp |
| AmoebaDB Download | http://amoebadb.org/common/downloads/ |
| CryptoDB Download | http://cryptodb.org/common/downloads |
| GiardiaDB Download | http://giardiadb.org/common/downloads |
| MicrosporidiaDB Download | http://microsporidiadb.org/common/downloads |
| PyroPlasmaDB Download | http://piroplasmadb.org/common/downloads |
| PlasmoDB Download | http://plasmodb.org/common/downloads |
| ToxoDB Download | http://toxodb.org/common/downloads |
| TrichDB Download | http://trichdb.org/common/downloads |
| Search | https://eupathdb.org/eupathdb/showApplication.do |
| Data Submission | https://eupathdb.org/eupathdb/dataSubmission.jsp |
| Browse Data Sets | https://eupathdb.org/eupathdb/app/search/dataset/AllDatasets/result |
REST Web Services
| REST | http://eupathdb.org/eupathdb/serviceList.jsp |
EuPathDB: a portal to eukaryotic pathogen databases.
Aurrecoechea C., Brestelli J., Brunk BP., Fischer S., Gajria B., Gao X., Gingle A., Grant G., Harb OS., Heiges M., Innamorato F., Iodice J., Kissinger JC., Kraemer ET., Li W., Miller JA., Nayak V., Pennington C., Pinney DF., Roos DS., Ross C., Srinivasamoorthy G., Stoeckert CJ., Thibodeau R., Treatman C., Wang H.,
Nucleic Acids Res. 2010
ApiDB: integrated resources for the apicomplexan bioinformatics resource center.
Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC.
Nucleic Acids Res. 2007
Standardized metadata for human pathogen/vector genomic sequences.
Dugan VG,Emrich SJ,Giraldo-Calderon GI,Harb OS,Newman RM,Pickett BE,Schriml LM,Stockwell TB,Stoeckert CJ Jr,Sullivan DE,Singh I,Ward DV,Yao A,Zheng J,Barrett T,Birren B,Brinkac L,Bruno VM,Caler E,Chapman S,Collins FH,Cuomo CA,Di Francesco V,Durkin S,Eppinger M,Feldgarden M,Fraser C,Fricke WF,Giovanni M,Henn MR,Hine E,Hotopp JD,Karsch-Mizrachi I,Kissinger JC,Lee EM,Mathur P,Mongodin EF,Murphy CI,Myers G,Neafsey DE,Nelson KE,Nierman WC,Puzak J,Rasko D,Roos DS,Sadzewicz L,Silva JC,Sobral B,Squires RB,Stevens RL,Tallon L,Tettelin H,Wentworth D,White O,Will R,Wortman J,Zhang Y,Scheuermann RH
PLoS One 2014
The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.
Harb OS,Roos DS
Methods Mol Biol 2014
SchistoDB: an updated genome resource for the three key schistosomes of humans.
Zerlotini A,Aguiar ER,Yu F,Xu H,Li Y,Young ND,Gasser RB,Protasio AV,Berriman M,Roos DS,Kissinger JC,Oliveira G
Nucleic Acids Res 2012
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Record Maintainer
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Funds
Bill and Melinda Gates Foundation, Seattle, Washington, USA (Charitable foundation)
National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA (Government body)
Maintains
Institute of Integrative Biology, University of Liverpool, Liverpool, UK (Government body)
The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK (Research institute)
Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
