Databases > DOI:10.25504/FAIRsharing.f94905
Claim Ownership Ask Question

ready Eukaryotic Pathogen Database Resources

Abbreviation:EuPathDB

Recommended
General Information
EuPathDB is an integrated database covering the eukaryotic pathogens. While each of the taxonomic groups within this resource is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these resources, and the opportunity to leverage orthology for searches across genera.

Homepage http://eupathdb.org

Developed in Uganda , United Kingdom , United States




In the following recommendations:




How to cite this record FAIRsharing.org: EuPathDB; Eukaryotic Pathogen Database Resources; DOI: 10.25504/FAIRsharing.f94905; Last edited: Feb. 22, 2018, 2:49 p.m.; Last accessed: Jun 18 2018 4:39 p.m.


Record updated: June 29, 2016, 1:17 p.m. by The FAIRsharing Team.


In Collections
Data Citation Implementation
Open Science Prize
NIH-supported data repositories



Access / Retrieve Data

Conditions of Use


Data Access

Sequence Retrieval and Download http://eupathdb.org/eupathdb/srt.jsp
AmoebaDB Download http://amoebadb.org/common/downloads/
CryptoDB Download http://cryptodb.org/common/downloads
GiardiaDB Download http://giardiadb.org/common/downloads
MicrosporidiaDB Download http://microsporidiadb.org/common/downloads
PyroPlasmaDB Download http://piroplasmadb.org/common/downloads
PlasmoDB Download http://plasmodb.org/common/downloads
ToxoDB Download http://toxodb.org/common/downloads
TrichDB Download http://trichdb.org/common/downloads

REST Web Services

REST http://eupathdb.org/eupathdb/serviceList.jsp


Publications

EuPathDB: a portal to eukaryotic pathogen databases.

Aurrecoechea C., Brestelli J., Brunk BP., Fischer S., Gajria B., Gao X., Gingle A., Grant G., Harb OS., Heiges M., Innamorato F., Iodice J., Kissinger JC., Kraemer ET., Li W., Miller JA., Nayak V., Pennington C., Pinney DF., Roos DS., Ross C., Srinivasamoorthy G., Stoeckert CJ., Thibodeau R., Treatman C., Wang H.,
Nucleic Acids Res. 2010

View Paper (PubMed) View Paper (DOI)

ApiDB: integrated resources for the apicomplexan bioinformatics resource center.

Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC.
Nucleic Acids Res. 2007

View Paper (PubMed)

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG,Emrich SJ,Giraldo-Calderon GI,Harb OS,Newman RM,Pickett BE,Schriml LM,Stockwell TB,Stoeckert CJ Jr,Sullivan DE,Singh I,Ward DV,Yao A,Zheng J,Barrett T,Birren B,Brinkac L,Bruno VM,Caler E,Chapman S,Collins FH,Cuomo CA,Di Francesco V,Durkin S,Eppinger M,Feldgarden M,Fraser C,Fricke WF,Giovanni M,Henn MR,Hine E,Hotopp JD,Karsch-Mizrachi I,Kissinger JC,Lee EM,Mathur P,Mongodin EF,Murphy CI,Myers G,Neafsey DE,Nelson KE,Nierman WC,Puzak J,Rasko D,Roos DS,Sadzewicz L,Silva JC,Sobral B,Squires RB,Stevens RL,Tallon L,Tettelin H,Wentworth D,White O,Will R,Wortman J,Zhang Y,Scheuermann RH
PLoS One 2014

View Paper (PubMed) View Paper (DOI)

The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.

Harb OS,Roos DS
Methods Mol Biol 2014

View Paper (PubMed) View Paper (DOI)

SchistoDB: an updated genome resource for the three key schistosomes of humans.

Zerlotini A,Aguiar ER,Yu F,Xu H,Li Y,Young ND,Gasser RB,Protasio AV,Berriman M,Roos DS,Kissinger JC,Oliveira G
Nucleic Acids Res 2012

View Paper (PubMed) View Paper (DOI)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats