databases > DOI:10.25504/FAIRsharing.tp9z4q

ready ArchDB

General Information
ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al.

Homepage http://sbi.imim.es/archdb

Countries that developed this resource Spain

Created in 2004

Taxonomic range

Subjects 





How to cite this record FAIRsharing.org: ArchDB; ArchDB; DOI: https://doi.org/10.25504/FAIRsharing.tp9z4q; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: May 07 2021 6:05 a.m.


Record updated: Sept. 30, 2016, 10:12 a.m. by The FAIRsharing Team.

Show edit history




Access / Retrieve Data

Conditions of Use


Data Access

Data download http://sbi.imim.es/archdb/download



Publications

ArchDB: automated protein loop classification as a tool for structural genomics.

Espadaler J., Fernandez-Fuentes N., Hermoso A., Querol E., Aviles FX., Sternberg MJ., Oliva B.,
Nucleic Acids Res. 2004

View Paper (PubMed)

ArchDB 2014: structural classification of loops in proteins.

Bonet J,Planas-Iglesias J,Garcia-Garcia J,Marin-Lopez MA,Fernandez-Fuentes N,Oliva B
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined



Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Maintains

Grant Number(s)

  • EUI2009-04018 (Spanish Ministry of Science and Innovation (MICINN))

  • FEDER BIO2008-0205 (Spanish Ministry of Science and Innovation (MICINN))

  • FEDER BIO2011-22568 (Spanish Ministry of Science and Innovation (MICINN))