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PeptideAtlas

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General Information

The PeptideAtlas Project provides a publicly-accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and sequence and spectral library searches are applied. Analyses are performed to produce a probability of correct identification for all results in a uniform manner, together with false discovery rates at the whole-atlas level.

Homepage http://www.peptideatlas.org

Countries that developed this resource United States

Created in 2004

Taxonomic range

Apis

Bos taurus

Caenorhabditis elegans

Leptospira interrogans

Mus musculus

Rattus rattus

Saccharomyces cerevisiae

Schizosaccharomyces pombe

Streptococcus

Sus scrofa

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: PeptideAtlas; PeptideAtlas; DOI: https://doi.org/10.25504/FAIRsharing.dvyrsz; Last edited: Feb. 25, 2021, 10:37 a.m.; Last accessed: Jan 19 2022 11:42 p.m.

Record updated: Feb. 25, 2021, 10:35 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.dvyrsz' by 'The FAIRsharing Team' at 10:35, 25 Feb 2021 (approved):

	'licences' has been modified:
		Before:
		After:
			Peptide Atlas Availability Statement|http://www.peptideatlas.org/public/faq.php|Data
		Added:
			Peptide Atlas Availability Statement|http://www.peptideatlas.org/public/faq.php|Data
		Removed:

	'dataProcesses' has been modified:
		Before:
			Submit, data curation, http://www.peptideatlas.org/upload/
			Search, data access, https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Search
			Raw Data Download, data access, http://www.peptideatlas.org/repository/
			Bulk Download, data access, http://www.peptideatlas.org/builds/
		After:
			Submit, data curation, http://www.peptideatlas.org/upload/
			Advanced Search, data access, https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Search
			Raw Data Download, data access, http://www.peptideatlas.org/repository/
			Bulk Download, data access, http://www.peptideatlas.org/builds/
		Added:
			Advanced Search, data access, https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Search
		Removed:
			Search, data access, https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Search

	'onto_disciplines' has been modified:
		Before:
			Life Science
		After:
			Proteomics
		Added:
			Proteomics
		Removed:
			Life Science

	'description' has been modified:
		Before: The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.
		After: The PeptideAtlas Project provides a publicly-accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and sequence and spectral library searches are applied. Analyses are performed to produce a probability of correct identification for all results in a uniform manner, together with false discovery rates at the whole-atlas level.

	'onto_domains' has been modified:
		Before:
			Annotation
			Mass spectrometry spectra
			protein
			structure
		After:
			Annotation
			Mass spectrometry spectra
			Structure
			protein
			structure
		Added:
			Structure
		Removed:

In Collections

NIH-supported data repositories

Data Citation Implementation

Open Science Prize

Support

General

FAQ	Peptide Atlas FAQ
contact form	Contact Form

Additional Information

Contact

Eric W. Deutsch ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Peptide Atlas Availability Statement

Data Curation

Submit

http://www.peptideatlas.org/upload/

Data Access

Advanced Search	https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Search
Raw Data Download	http://www.peptideatlas.org/repository/
Bulk Download	http://www.peptideatlas.org/builds/

Publications

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows.

Deutsch EW, Lam H, Aebersold R.
EMBO Rep. 2008

View Paper (PubMed) View Publication

The PeptideAtlas project

Desiere F, Deutsch EW, King NL, Nesvizhskii AI, Mallick P, Eng J, Chen S, Eddes J, Loevenich SN, Aebersold R.
Nucleic Acids Res. 2006

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

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Funds

National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)

Maintains

Seattle Proteome Center
Institute for Systems Biology (ISB), Seattle, WA, USA (Research institute)

Grant Number(s)

N01-HV-28179 (National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA)

PeptideAtlas

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