databases > DOI:10.25504/FAIRsharing.mphj4z

ready Yeast Searching for Transcriptional Regulators and Consensus Tracking

Abbreviation:YEASTRACT

General Information
YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references.

Homepage http://www.yeastract.com

Countries that developed this resource Portugal

Created in 2005

Subjects 





How to cite this record FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: Jan. 8, 2019, 1:18 p.m.; Last accessed: Jan 21 2021 5:50 p.m.


Record updated: Sept. 9, 2016, 5:20 p.m. by The FAIRsharing Team.

Show edit history



Tools
Transform an ORF List into a Gene List http://www.yeastract.com/formorftogene.php
IUPAC Code Generation for DNA Sequences http://www.yeastract.com/iupacgeneration.php
Generate Regulation Matrix http://www.yeastract.com/formgenerateregulationmatrix.php

Access / Retrieve Data

Conditions of Use

Applies to: Data use
  • Attribution required
  • Publicly available data

Data Access

Download http://www.yeastract.com/download.php
search http://www.yeastract.com/formfindregulators.php



Publications

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface.

Abdulrehman D., Monteiro PT., Teixeira MC., Mira NP., Lourenço AB., dos Santos SC., Cabrito TR., Francisco AP., Madeira SC., Aires RS., Oliveira AL., Sá-Correia I., Freitas AT.,
Nucleic Acids Res. 2011

View Paper (PubMed) View Publication

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae.

Teixeira MC,Monteiro PT,Guerreiro JF,Goncalves JP,Mira NP,dos Santos SC,Cabrito TR,Palma M,Costa C,Francisco AP,Madeira SC,Oliveira AL,Freitas AT,Sa-Correia I
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae.

Monteiro PT,Mendes ND,Teixeira MC,d'Orey S,Tenreiro S,Mira NP,Pais H,Francisco AP,Carvalho AM,Lourenco AB,Sa-Correia I,Oliveira AL,Freitas AT
Nucleic Acids Res 2007

View Paper (PubMed) View Publication

The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.

Teixeira MC,Monteiro P,Jain P,Tenreiro S,Fernandes AR,Mira NP,Alenquer M,Freitas AT,Oliveira AL,Sa-Correia I
Nucleic Acids Res 2005

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Maintains

Grant Number(s)

  • PTDC/BIO/72063/2006 (Fundaeo para a Ciencia e a Tecnologia (FCT), Lisboa, Portugal)

  • PTDC/EIA/67722/2006 (Fundaeo para a Ciencia e a Tecnologia (FCT), Lisboa, Portugal)

  • PTDC/EIA/71587/2006 (Fundaeo para a Ciencia e a Tecnologia (FCT), Lisboa, Portugal)

  • Pest-OE/EQB/LA0023/2011_research line (Fundaeo para a Ciencia e a Tecnologia (FCT), Lisboa, Portugal)