Rat Genome Database
Abbreviation:RGD
Homepage http://rgd.mcw.edu/
Countries that developed this resource United States
Created in 1999
Taxonomic range
Knowledge Domains
Subjects
In the following recommendations:
| contact form | http://rgd.mcw.edu/contact/index.shtml |
| forum | Rat Community Forum |
| help | http://rgd.mcw.edu/wg/help3 |
Additional Information
| Contact | Jennifer R Smith |
Conditions of Use
Applies to: Data use- Attribution required
- Publicly available data
- RGD Data Licence - No re-use without permission
Data Access
| Download | ftp://ftp.rgd.mcw.edu/pub/ |
REST Web Services
| The RGD REST API provides targeted programmatic access to the data, annotations, and analysis tools available at the Rat Genome Database. | http://rest.rgd.mcw.edu/rgdws/swagger-ui.html |
The Rat Genome Database, update 2007--easing the path from disease to data and back again.
Twigger SN., Shimoyama M., Bromberg S., Kwitek AE., Jacob HJ.,
Nucleic Acids Res. 2007
The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database.
Hayman GT,Laulederkind SJ,Smith JR,Wang SJ,Petri V,Nigam R,Tutaj M,De Pons J,Dwinell MR,Shimoyama M
Database (Oxford) 2016
A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat.
Steen RG,Kwitek-Black AE,Glenn C,Gullings-Handley J,Van Etten W,Atkinson OS,Appel D,Twigger S,Muir M,Mull T,Granados M,Kissebah M,Russo K,Crane R,Popp M,Peden M,Matise T,Brown DM,Lu J,Kingsmore S,Tonellato PJ,Rozen S,Slonim D,Young P,Jacob HJ
Genome Res 1999
The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease.
Shimoyama M,De Pons J,Hayman GT,Laulederkind SJ,Liu W,Nigam R,Petri V,Smith JR,Tutaj M,Wang SJ,Worthey E,Dwinell M,Jacob H
Nucleic Acids Res 2014
Reporting Guidelines
No guidelines defined
Terminology Artifacts
- Chemical Entities of Biological Interest
- Cell Ontology
- Pathway Ontology
- Evidence codes
- Mouse Adult Gross Anatomy Ontology
- Mammalian Phenotype Ontology
- OBO ReLationship
- Gene Ontology
- Rat Strain Ontology
- Measurement Method Ontology
- Experimental Conditions Ontology
- Clinical Measurement Ontology
- Vertebrate Trait Ontology
- Animal Trait Ontology for Livestock
Models and Formats
Identifier Schemas
Metrics
No metrics standards defined
Record Maintainer
This record is maintained by jrsmith
Funds
National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
Maintains
Medical College of Wisconsin (MCW), Wisconsin, USA (University)
Grant Number(s)
HL64541 (National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA)
