Edits to 'https://fairsharing.org/FAIRsharing.pfg82t' by 'The FAIRsharing Team' at 20:39, 26 Feb 2021 (approved):
'standardsImplemented' has been modified:
Before:
Chemical Entities of Biological Interest
Cell Ontology
Pathway Ontology
Evidence and Conclusion Ontology
Mouse Adult Gross Anatomy Ontology
Simple Omnibus Format in Text
Mammalian Phenotype Ontology
OBO ReLationship
Gene Ontology
FASTA Sequence Format
Generic Feature Format Version 3
Rat Strain Ontology
Measurement Method Ontology
Experimental Conditions Ontology
Clinical Measurement Ontology
Vertebrate Trait Ontology
Common Metadata Elements for Cataloging Biomedical Datasets
Animal Trait Ontology for Livestock
Gene Ontology (GO) Gene Association File Format 2.0
Research Resource Identifiers
Gene Ontology (GO) Gene Association File Format 2.1
Gene Ontology (GO) Gene Association File Format 2.2
After:
Chemical Entities of Biological Interest
Cell Ontology
Pathway Ontology
Sequence Ontology
Evidence and Conclusion Ontology
Mouse Adult Gross Anatomy Ontology
Simple Omnibus Format in Text
Mammalian Phenotype Ontology
OBO ReLationship
Human Phenotype Ontology
Gene Ontology
FASTA Sequence Format
Generic Feature Format Version 3
Rat Strain Ontology
Measurement Method Ontology
Experimental Conditions Ontology
Clinical Measurement Ontology
Vertebrate Trait Ontology
Common Metadata Elements for Cataloging Biomedical Datasets
UBER anatomy ONtology
Animal Trait Ontology for Livestock
Neuro Behavior Ontology
Gene Ontology (GO) Gene Association File Format 2.0
Research Resource Identifiers
Gene Ontology (GO) Gene Association File Format 2.1
Gene Ontology (GO) Gene Association File Format 2.2
Added:
Sequence Ontology
Human Phenotype Ontology
UBER anatomy ONtology
Neuro Behavior Ontology
Removed:
'accessPoints' has been modified:
Before:
REST|http://rest.rgd.mcw.edu/rgdws/swagger-ui.html|The RGD REST API provides targeted programmatic access to the data, annotations, and analysis tools available at the Rat Genome Database.
After:
REST|https://rest.rgd.mcw.edu/rgdws/swagger-ui.html|RGD API
Added:
REST|https://rest.rgd.mcw.edu/rgdws/swagger-ui.html|RGD API
Removed:
REST|http://rest.rgd.mcw.edu/rgdws/swagger-ui.html|The RGD REST API provides targeted programmatic access to the data, annotations, and analysis tools available at the Rat Genome Database.
'supportLinks' has been modified:
Before:
contact form|http://rgd.mcw.edu/contact/index.shtml
forum|http://mailman.mcw.edu/mailman/listinfo/rat-forum
help|http://rgd.mcw.edu/wg/help3
After:
blog|https://rgd.mcw.edu/wg/news2/
contact form|https://rgd.mcw.edu/contact/index.shtml
help|https://rgd.mcw.edu/wg/help3/
mailing list|http://mailman.mcw.edu/mailman/listinfo/rat-forum
online documentation|https://rgd.mcw.edu/wg/home/pathway2/
online documentation|https://rgd.mcw.edu/wg/home/rgd_rat_community_videos/
twitter|@ratgenome
Added:
blog|https://rgd.mcw.edu/wg/news2/
contact form|https://rgd.mcw.edu/contact/index.shtml
help|https://rgd.mcw.edu/wg/help3/
mailing list|http://mailman.mcw.edu/mailman/listinfo/rat-forum
online documentation|https://rgd.mcw.edu/wg/home/pathway2/
online documentation|https://rgd.mcw.edu/wg/home/rgd_rat_community_videos/
twitter|@ratgenome
Removed:
contact form|http://rgd.mcw.edu/contact/index.shtml
forum|http://mailman.mcw.edu/mailman/listinfo/rat-forum
help|http://rgd.mcw.edu/wg/help3
'description' has been modified:
Before: The Rat Genome Database is the premier site for genetic, genomic, phenotype, and disease data generated from rat research. It provides easy access to corresponding human and mouse data for cross-species comparison and its comprehensive data and innovative software tools make it a valuable resource for researchers worldwide.
After: The Rat Genome Database stores genetic, genomic, phenotype, and disease data generated from rat research. It provides access to corresponding data for eight other species, allowing cross-species comparison. Data curation is performed both manually and via an automated pipeline, giving RGD users integrated access to a wide variety of data to support their research.
'licences' has been modified:
Before:
Attribution required||Data
Publicly available data||Data
RGD Data Licence - No re-use without permission|http://rgd.mcw.edu/wg/home/disclaimer|Data
After:
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
RGD Data Licence|https://rgd.mcw.edu/wg/disclaimer/|Data
Added:
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
RGD Data Licence|https://rgd.mcw.edu/wg/disclaimer/|Data
Removed:
Attribution required||Data
Publicly available data||Data
RGD Data Licence - No re-use without permission|http://rgd.mcw.edu/wg/home/disclaimer|Data
'tools' has been modified:
Before:
submit||http://rgd.mcw.edu/registration-entry.shtml
After:
Added:
Removed:
submit||http://rgd.mcw.edu/registration-entry.shtml
'onto_disciplines' has been modified:
Before:
Life Science
After:
Comparative Genomics
Genomics
Added:
Comparative Genomics
Genomics
Removed:
Life Science
'dataProcesses' has been modified:
Before:
Download, data access, ftp://ftp.rgd.mcw.edu/pub/
After:
Download, data release, ftp://rgd.mcw.edu/pub
Visualization and Analysis, data access, https://rgd.mcw.edu/wg/tool-menu/
Search, data access, https://rgd.mcw.edu/wg/general-search/
Submit and Register Data, data curation, https://rgd.mcw.edu/registration-entry.shtml
Gene Search, data access, https://rgd.mcw.edu/rgdweb/search/genes.html
Browse Genome Information, data access, https://rgd.mcw.edu/rgdweb/report/genomeInformation/genomeInformation.html
QTL Search, data access, https://rgd.mcw.edu/rgdweb/search/qtls.html
SSLP / SNP Marker Search, data access, https://rgd.mcw.edu/rgdweb/search/markers.html
Browse Cell Lines, data access, https://rgd.mcw.edu/rgdweb/search/cellLines.html
Search References, data access, https://rgd.mcw.edu/rgdweb/search/references.html
Ontology Search, data access, https://rgd.mcw.edu/rgdweb/ontology/search.html
Seach Phenotypes and Models, data access, https://rgd.mcw.edu/wg/physiology/
Search Diseases, data access, https://rgd.mcw.edu/wg/portals/
Added:
Download, data release, ftp://rgd.mcw.edu/pub
Visualization and Analysis, data access, https://rgd.mcw.edu/wg/tool-menu/
Search, data access, https://rgd.mcw.edu/wg/general-search/
Submit and Register Data, data curation, https://rgd.mcw.edu/registration-entry.shtml
Gene Search, data access, https://rgd.mcw.edu/rgdweb/search/genes.html
Browse Genome Information, data access, https://rgd.mcw.edu/rgdweb/report/genomeInformation/genomeInformation.html
QTL Search, data access, https://rgd.mcw.edu/rgdweb/search/qtls.html
SSLP / SNP Marker Search, data access, https://rgd.mcw.edu/rgdweb/search/markers.html
Browse Cell Lines, data access, https://rgd.mcw.edu/rgdweb/search/cellLines.html
Search References, data access, https://rgd.mcw.edu/rgdweb/search/references.html
Ontology Search, data access, https://rgd.mcw.edu/rgdweb/ontology/search.html
Seach Phenotypes and Models, data access, https://rgd.mcw.edu/wg/physiology/
Search Diseases, data access, https://rgd.mcw.edu/wg/portals/
Removed:
Download, data access, ftp://ftp.rgd.mcw.edu/pub/
'publications' has been modified:
Before:
The Rat Genome Database, update 2007--easing the path from disease to data and back again.|Twigger SN., Shimoyama M., Bromberg S., Kwitek AE., Jacob HJ., |Nucleic Acids Res.|2007
The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database.|Hayman GT,Laulederkind SJ,Smith JR,Wang SJ,Petri V,Nigam R,Tutaj M,De Pons J,Dwinell MR,Shimoyama M|Database (Oxford)|2016
A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat.|Steen RG,Kwitek-Black AE,Glenn C,Gullings-Handley J,Van Etten W,Atkinson OS,Appel D,Twigger S,Muir M,Mull T,Granados M,Kissebah M,Russo K,Crane R,Popp M,Peden M,Matise T,Brown DM,Lu J,Kingsmore S,Tonellato PJ,Rozen S,Slonim D,Young P,Jacob HJ|Genome Res|1999
The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease.|Shimoyama M,De Pons J,Hayman GT,Laulederkind SJ,Liu W,Nigam R,Petri V,Smith JR,Tutaj M,Wang SJ,Worthey E,Dwinell M,Jacob H|Nucleic Acids Res|2014
After:
The Rat Genome Database, update 2007--easing the path from disease to data and back again.|Twigger SN., Shimoyama M., Bromberg S., Kwitek AE., Jacob HJ., |Nucleic Acids Res.|2007
The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database.|Hayman GT,Laulederkind SJ,Smith JR,Wang SJ,Petri V,Nigam R,Tutaj M,De Pons J,Dwinell MR,Shimoyama M|Database (Oxford)|2016
A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat.|Steen RG,Kwitek-Black AE,Glenn C,Gullings-Handley J,Van Etten W,Atkinson OS,Appel D,Twigger S,Muir M,Mull T,Granados M,Kissebah M,Russo K,Crane R,Popp M,Peden M,Matise T,Brown DM,Lu J,Kingsmore S,Tonellato PJ,Rozen S,Slonim D,Young P,Jacob HJ|Genome Res|1999
The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease.|Shimoyama M,De Pons J,Hayman GT,Laulederkind SJ,Liu W,Nigam R,Petri V,Smith JR,Tutaj M,Wang SJ,Worthey E,Dwinell M,Jacob H|Nucleic Acids Res|2014
The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform.|Smith JR,Hayman GT,Wang SJ,Laulederkind SJF,Hoffman MJ,Kaldunski ML,Tutaj M,Thota J,Nalabolu HS,Ellanki SLR,Tutaj MA,De Pons JL,Kwitek AE,Dwinell MR,Shimoyama ME|Nucleic Acids Res|2019
Added:
The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform.|Smith JR,Hayman GT,Wang SJ,Laulederkind SJF,Hoffman MJ,Kaldunski ML,Tutaj M,Thota J,Nalabolu HS,Ellanki SLR,Tutaj MA,De Pons JL,Kwitek AE,Dwinell MR,Shimoyama ME|Nucleic Acids Res|2019
Removed:
'taxonomies' has been modified:
Before:
Homo sapiens
Mus musculus
Rattus norvegicus
After:
Canis lupus familiaris
Chinchilla lanigera
Homo sapiens
Ictidomys tridecemlineatus
Mus musculus
Rattus norvegicus
Sus scrofa
Added:
Canis lupus familiaris
Chinchilla lanigera
Ictidomys tridecemlineatus
Sus scrofa
Removed:
'homepage' has been modified:
Before: http://rgd.mcw.edu/
After: https://rgd.mcw.edu/
Rat Genome Database
