databases > DOI:10.25504/FAIRsharing.b9st5p

ready Conserved Domain Database

Abbreviation:CDD

General Information
The Conserved Domain Database (CDD) brings together several collections of multiple sequence alignments representing conserved domains, including NCBI-curated domains, which use 3D-structure information to explicitly to define domain boundaries and provide insights into sequence/structure/function relationships, as well as domain models imported from a number of external source databases (Pfam, SMART, COG, NCBI Protein Clusters, TIGRFAM). NCBI-curated models are organized hierarchically into families, sub- and super-families, and come with annotation of functional sites.

Homepage http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml

Developed in United States

Created in 2008

Taxonomic range






How to cite this record FAIRsharing.org: CDD; Conserved Domain Database; DOI: https://doi.org/10.25504/FAIRsharing.b9st5p; Last edited: Feb. 22, 2018, 2:51 p.m.; Last accessed: Sep 21 2018 9:31 a.m.


This record is maintained by marchlerbauer  ORCID

Record updated: Jan. 12, 2018, 7:59 p.m. by The FAIRsharing Team.

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Support

General

support email info@ncbi.nlm.nih.gov
help https://www.ncbi.nlm.nih.gov/Structure/c ...

Additional Information

Contact Aron Marchler-Bauer   ORCID
Identifiers.org MIR:00000119

Tools
BATCH CD-Search http://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi
CDART (Conserved Domain Architecture Retrieval Tool) http://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi
CDTree (domain hierarchy editor) http://www.ncbi.nlm.nih.gov/Structure/cdtree/cdtree.shtml 3.1
Cn3D (structure viewer and alignment editor) http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml 4.3

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

search http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi
Download ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd



Publications

CDD: specific functional annotation with the Conserved Domain Database.

Marchler-Bauer A., Anderson JB., Chitsaz F., Derbyshire MK., DeWeese-Scott C., Fong JH., Geer LY., Geer RC., Gonzales NR., Gwadz M., He S., Hurwitz DI., Jackson JD., Ke Z., Lanczycki CJ., Liebert CA., Liu C., Lu F., Lu S., Marchler GH., Mullokandov M., Song JS., Tasneem A., Thanki N., Yamashita RA., Zhang D., Zhang N., Bryant SH.,
Nucleic Acids Res. 2009

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CDD: conserved domains and protein three-dimensional structure

Marchler-Bauer A., Zheng C., Chitsaz F., Derbyshire MK., Geer LY., Geer RC., Gonzales NR., Gwadz M., Hurwitz DI., Lanczycki CJ., Lu F., Lu S., Marchler GH., Song JS., Thanki N., Yamashita RA., Zhang D., Bryant SH.
Nucleic Acids Res. 2013

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CDD: NCBI's conserved domain database.

Marchler-Bauer A, Derbyshire MK, Gonzales NR, Lu S, Chitsaz F, Geer LY, Geer RC, He J, Gwadz M, Hurwitz DI, Lanczycki CJ, Lu F, Marchler GH, Song JS, Thanki N, Wang Z, Yamashita RA, Zhang D, Zheng C, Bryant SH
Nucleic Acids Research 2015

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