Conserved Domain Database
Abbreviation:CDD
Homepage https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
Countries that developed this resource United States
Created in 2008
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: CDD; Conserved Domain Database; DOI: https://doi.org/10.25504/FAIRsharing.b9st5p; Last edited: March 25, 2019, 9:44 p.m.; Last accessed: Jan 27 2021 11:44 p.m.
Record updated: March 22, 2019, 9:12 a.m. by The FAIRsharing Team.
blog | News |
support email | info@ncbi.nlm.nih.gov |
help | https://www.ncbi.nlm.nih.gov/Structure/c ... |
Additional Information
Contact | Aron Marchler-Bauer ORCID |
CDTree (domain hierarchy editor) | http://www.ncbi.nlm.nih.gov/Structure/cdtree/cdtree.shtml | 3.1 |
Cn3D (structure viewer and alignment editor) | http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml | 4.3.1 |
Conditions of Use
Applies to: Data use- Attribution required
- Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
Data Access
Search | https://www.ncbi.nlm.nih.gov/Structure/cdd/docs/cdd_search.html |
FTP Download | ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd |
BATCH CD-Search | http://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi |
CDART (Conserved Domain Architecture Retrieval Tool) | http://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi |
CDD: specific functional annotation with the Conserved Domain Database.
Marchler-Bauer A., Anderson JB., Chitsaz F., Derbyshire MK., DeWeese-Scott C., Fong JH., Geer LY., Geer RC., Gonzales NR., Gwadz M., He S., Hurwitz DI., Jackson JD., Ke Z., Lanczycki CJ., Liebert CA., Liu C., Lu F., Lu S., Marchler GH., Mullokandov M., Song JS., Tasneem A., Thanki N., Yamashita RA., Zhang D., Zhang N., Bryant SH.,
Nucleic Acids Res. 2009
CDD: conserved domains and protein three-dimensional structure
Marchler-Bauer A., Zheng C., Chitsaz F., Derbyshire MK., Geer LY., Geer RC., Gonzales NR., Gwadz M., Hurwitz DI., Lanczycki CJ., Lu F., Lu S., Marchler GH., Song JS., Thanki N., Yamashita RA., Zhang D., Bryant SH.
Nucleic Acids Res. 2013
CDD: NCBI's conserved domain database.
Marchler-Bauer A, Derbyshire MK, Gonzales NR, Lu S, Chitsaz F, Geer LY, Geer RC, He J, Gwadz M, Hurwitz DI, Lanczycki CJ, Lu F, Marchler GH, Song JS, Thanki N, Wang Z, Yamashita RA, Zhang D, Zheng C, Bryant SH
Nucleic Acids Research 2015
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.
Marchler-Bauer A,Bo Y,Han L,He J,Lanczycki CJ,Lu S,Chitsaz F,Derbyshire MK,Geer RC,Gonzales NR,Gwadz M,Hurwitz DI,Lu F,Marchler GH,Song JS,Thanki N,Wang Z,Yamashita RA,Zhang D,Zheng C,Geer LY,Bryant SH
Nucleic Acids Res 2016
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
- Pfam
- Simple Modular Architecture Research Tool
- Integrated resource of protein families, domains and functional sites
- TIGRFAMs
- Clusters of Orthologous Groups of Proteins: Phylogenetic classification of proteins encoded in complete genomes
- Molecular Modeling Database (MMDB)
- The Protein Database
- Domain mapping of disease mutations
- Genome Properties
- Pathogen-Host Interaction Data integration and Analysis System
- PathosSystems Resource Integration Center Repository
This record is not implemented by any policy.
Record Maintainer
This record is maintained by marchlerbauer ORCID
Funds
National Library of Medicine (NLM)), Bethesda, MD, USA (Government body)
Maintains
National Center for Biotechnology Information (NCBI), Rockville, MD, USA (Government body)