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Rice Genome Annotation Project

General Information

This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 12 rice chromosomes. These data are available through search pages and the Genome Browser that provides an integrated display of annotation data.

Homepage http://rice.plantbiology.msu.edu/

Countries that developed this resource United States

Taxonomic range

Oryza

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: Rice Genome Annotation Project; Rice Genome Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.qrw6b7; Last edited: April 26, 2021, 2:41 p.m.; Last accessed: Jan 21 2022 10:59 a.m.

Record updated: April 20, 2021, 1:11 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.qrw6b7' by 'The FAIRsharing Team' at 13:11, 20 Apr 2021 (approved):

	'licences' has been modified:
		Before:
			Attribution required||Data
			Publicly available data||Data
		After:
			Rice Genome Annotation Project Attribution required|http://rice.plantbiology.msu.edu/index.shtml|Data
		Added:
			Rice Genome Annotation Project Attribution required|http://rice.plantbiology.msu.edu/index.shtml|Data
		Removed:
			Attribution required||Data
			Publicly available data||Data

Edits to 'https://fairsharing.org/FAIRsharing.qrw6b7' by 'The FAIRsharing Team' at 10:45, 21 Nov 2018 (approved):

	'domains' has been modified:
		Before:
			Chromosome
			Deoxyribonucleic acid (DNA)
			Life Science
		After:
			Chromosome
			DNA sequence data
			Deoxyribonucleic acid (DNA)
			Life Science
		Added:
			DNA sequence data
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.qrw6b7' by 'The FAIRsharing Team' at 14:30, 16 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			C. Robin Buell
			Domain list has changed: 
			Previous values:
			DNA|material|http://purl.org/obo/owl/GO#GO_0005574
			New values: 
			DNA|material|http://purl.org/obo/owl/GO#GO_0005574
			Genome sequence||
			Chromosome||
			Life Science|domain|
			Tools have changed: 
			Previous values:
			search
			BLAST
			analyze
			browse
			New values: 
			BLAST
			analyze
			Support links have changed: 
			Previous values:
			http://rice.plantbiology.msu.edu/home_faq.shtml
			http://rice.plantbiology.msu.edu/home_overview.shtml
			http://rice.plantbiology.msu.edu/home_training.shtml
			New values: 
			http://rice.plantbiology.msu.edu/home_faq.shtml
			http://rice.plantbiology.msu.edu/home_overview.shtml
			http://rice.plantbiology.msu.edu/home_training.shtml
			rice@plantbiology.msu.edu
			Data processes have changed: 
			Previous values:
			Download
			New values: 
			Download
			search
			browse
			Grants have changed: 
			Previous values:
			New values: 
			DBI-0321538
			DBI-0834043
		Added:
		Removed:

Support

General

FAQ	http://rice.plantbiology.msu.edu/home_fa ...
support email	rice@plantbiology.msu.edu
help	http://rice.plantbiology.msu.edu/home_ov ...
training	http://rice.plantbiology.msu.edu/home_tr ...

Additional Information

Contact

C. Robin Buell

Tools

BLAST	http://rice.plantbiology.msu.edu/analyses_search_blast.shtml
analyze	http://rice.plantbiology.msu.edu/coexpression.shtml

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Rice Genome Annotation Project Attribution required

Data Access

Download	http://rice.plantbiology.msu.edu/downloads.shtml
search	http://rice.plantbiology.msu.edu/analyses_search.shtml
browse	http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/

Publications

The TIGR Rice Genome Annotation Resource: improvements and new features.

Ouyang S., Zhu W., Hamilton J., Lin H., Campbell M., Childs K., Thibaud-Nissen F., Malek RL., Lee Y., Zheng L., Orvis J., Haas B., Wortman J., Buell CR.,
Nucleic Acids Res. 2007

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Gene Ontology

Models and Formats

FASTA Sequence Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

PlantRNA

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

National Science Foundation (NSF), USA (Government body)

Grant Number(s)

DBI-0321538 (National Science Foundation (NSF), USA)
DBI-0834043 (National Science Foundation (NSF), USA)

Rice Genome Annotation Project

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