Protein Data Bank Japan
Homepage http://www.pdbj.org/
Countries that developed this resource Japan
Created in 2011
Taxonomic range
Knowledge Domains
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User-defined Tags
In the following recommendations:
How to cite this record FAIRsharing.org: Protein Data Bank Japan; Protein Data Bank Japan; DOI: https://doi.org/10.25504/FAIRsharing.rs2815; Last edited: March 9, 2021, 4:08 p.m.; Last accessed: Apr 12 2021 7:54 p.m.
Record updated: Feb. 23, 2021, 11:02 a.m. by The FAIRsharing Team.
| FAQ | http://pdbj.org/#!help?PID=5 |
| contact form | http://pdbj.org/#!contact?tab=PDBjmaster |
| help | http://pdbj.org/help/ |
| @PDBj_en |
Additional Information
| Contact | Haruki Nakamura ORCID |
| ASH | http://sysimm.ifrec.osaka-u.ac.jp/ash_service/ | |
| Yorodumi | http://pdbj.org/emnavi/viewtop.php | |
| MAFFTash | http://sysimm.ifrec.osaka-u.ac.jp/MAFFTash/ | 4.1 |
| NMR Tool Box | http://bmrbdep.pdbj.org/en/nmrtoolbox/ | |
| Pairwise gmfit | http://pdbj.org/gmfit/ | |
| CRNPRED | http://pdbj.org/crnpred/ | |
| Spanner | http://pdbj.org/spanner/ | |
| SFAS | https://sysimm.ifrec.osaka-u.ac.jp/pipeline7/ | |
| HOMCOS | http://homcos.pdbj.org/?LANG=en |
Conditions of Use
Applies to: Data use- Attribution required
- Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
Data Access
| Download | http://pdbj.org/#!showBlogPost?PID=8 |
| Advanced search | http://pdbj.org/#!advancedSearch |
| search | http://pdbj.org/#!mine |
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format.
Kinjo AR., Suzuki H., Yamashita R., Ikegawa Y., Kudou T., Igarashi R., Kengaku Y., Cho H., Standley DM., Nakagawa A., Nakamura H.,
Nucleic Acids Res. 2012
[Development of PDBj: Advanced database for protein structures].
Nakamura H,Ito N,Kusunoki M
Tanpakushitsu Kakusan Koso 2002
PDBj Mine: design and implementation of relational database interface for Protein Data Bank Japan.
Kinjo AR,Yamashita R,Nakamura H
Database (Oxford) 2010
Protein Data Bank Japan (PDBj): an interview with Haruki Nakamura of Osaka University by Wendy A. Warr.
Nakamura H
J Comput Aided Mol Des 2011
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures.
Kinjo AR,Bekker GJ,Suzuki H,Tsuchiya Y,Kawabata T,Ikegawa Y,Nakamura H
Nucleic Acids Res 2016
New tools and functions in data-out activities at Protein Data Bank Japan (PDBj).
Kinjo AR,Bekker GJ,Wako H,Endo S,Tsuchiya Y,Sato H,Nishi H,Kinoshita K,Suzuki H,Kawabata T,Yokochi M,Iwata T,Kobayashi N,Fujiwara T,Kurisu G,Nakamura H
Protein Sci 2017
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Funds
Database Integration Coordination Program from the National Bioscience Database Center, Tokyo, Japan (Government body)
Platform Project for Supporting in Drug Discovery and Life Science Research, Tokyo, Japan (Research institute)
Institute for Bioinformatics Research and Development, Japan Science and Technology Agency (JST), Tokyo, Japan (Research institute)
Japan Society for the Promotion of Science (JSPS), Tokyo, Japan
Maintains
Osaka University, Japan (University)
Grant Number(s)
26440078 (Japan Society for the Promotion of Science (JSPS), Tokyo, Japan)
