databases > DOI:10.25504/FAIRsharing.xshwbf
Help us curate and collate the databases and standards useful for COVID-19 research. Our COVID-19 Collection (https://fairsharing.org/collection/COVID19Resources) is growing, but not yet complete. Join our community curatathon and tell us what's missing. Email contact@fairsharing.org to join!

deprecated Sanger Pfam Mirror

Abbreviation:Sanger Pfam

General Information
This record was deprecated on May 10, 2016 for the following reason(s): This resource is no longer provided by the associated maintainers, The Sanger Institute. Please see the BioSharing record for Pfam (https://biosharing.org/biodbcore-000081) instead.

The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.


This record is replaced by:

Homepage http://pfam.sanger.ac.uk/

Countries that developed this resource United Kingdom

Taxonomic range

Knowledge Domains 

Subjects 





How to cite this record FAIRsharing.org: Sanger Pfam; Sanger Pfam Mirror; DOI: https://doi.org/10.25504/FAIRsharing.xshwbf; Last edited: Jan. 8, 2019, 1:19 p.m.; Last accessed: Apr 06 2020 5:17 a.m.


This record is maintained by agb@ebi.ac.uk

Record updated: Jan. 3, 2017, 5:02 p.m. by The FAIRsharing Team.

Show edit history




Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

Download ftp://ftp.sanger.ac.uk/pub/databases/Pfam



Publications

The Pfam protein families database.

Finn RD., Mistry J., Tate J., Coggill P., Heger A., Pollington JE., Gavin OL., Gunasekaran P., Ceric G., Forslund K., Holm L., Sonnhammer EL., Eddy SR., Bateman A.,
Nucleic Acids Res. 2010

View Paper (PubMed) View Publication

The Pfam protein families database.

Punta M., Coggill PC., Eberhardt RY., Mistry J., Tate J., Boursnell C., Pang N., Forslund K., Ceric G., Clements J., Heger A., Holm L., Sonnhammer EL., Eddy SR., Bateman A., Finn RD.,
Nucleic Acids Res. 2012

View Paper (PubMed)

Pfam: the protein families database.

Finn RD,Bateman A,Clements J,Coggill P,Eberhardt RY,Eddy SR,Heger A,Hetherington K,Holm L,Mistry J,Sonnhammer EL,Tate J,Punta M
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Undefined

Grant Number(s)

  • WT077044/Z/05/Z (The Wellcome Trust, UK)