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Sanger Pfam Mirror

Abbreviation:Sanger Pfam

General Information

This record was deprecated on May 10, 2016 for the following reason(s): This resource is no longer provided by the associated maintainers, The Sanger Institute. Please see the BioSharing record for Pfam (https://biosharing.org/biodbcore-000081) instead.

The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.

This record is replaced by:

Pfam

Homepage http://pfam.sanger.ac.uk/

Countries that developed this resource United Kingdom

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: Sanger Pfam; Sanger Pfam Mirror; DOI: https://doi.org/10.25504/FAIRsharing.xshwbf; Last edited: April 26, 2021, 2:59 p.m.; Last accessed: Oct 19 2021 8:27 a.m.

This record is maintained by agb@ebi.ac.uk

Record updated: April 16, 2021, 11:20 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.xshwbf' by 'The FAIRsharing Team' at 11:20, 16 Apr 2021 (approved):

	'organizations' has been modified:
		Before:
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
			The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK|http://www.sanger.ac.uk|Maintains
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
		After:
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
			The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK|http://www.sanger.ac.uk|Maintains
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
		Added:
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
		Removed:
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined

	'miriam_id' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.xshwbf' by 'The FAIRsharing Team' at 00:26, 29 Dec 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			General Help
			Domain list has changed: 
			Previous values:
			Domain||
			Protein|material|http://purl.org/obo/owl/GO#GO_0003675
			New values: 
			Domain||
			Protein|material|http://purl.org/obo/owl/GO#GO_0003675
			Life Science|domain|
			Publication List has changed: 
			Previous values:
			The Pfam protein families database.
			The Pfam protein families database.
			New values: 
			The Pfam protein families database.
			The Pfam protein families database.
			Pfam: the protein families database.
			Organisations have changed: 
			Previous values:
			Wellcome Trust Sanger Institute|Wellcome Trust Genome Campus|Cambridge|UK
			New values: 
			Wellcome Trust Sanger Institute|Wellcome Trust Genome Campus|Cambridge|UK
			European Bioinformatics Institute (EMBL-EBI)|Wellcome Trust Genome Campus|Hinxton|Cambridge|UK
			Related databases have changed: 
			Previous values:
			New values: 
			biodbcore-000544: UniProt Knowledgebase
			Grants have changed: 
			Previous values:
			New values: 
			WT077044/Z/05/Z
		Added:
		Removed:

Support

General

help	http://pfam.sanger.ac.uk/help
help	http://pfam.sanger.ac.uk/help#tabview=ta ...
help	http://pfam.sanger.ac.uk/help#tabview=ta ...

Additional Information

Contact

General Help

Tools

search	http://pfam.sanger.ac.uk/search
browse	http://pfam.sanger.ac.uk/browse
BLAST	http://pfam.sanger.ac.uk/search#tabview=tab2

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication

Data Access

Download

ftp://ftp.sanger.ac.uk/pub/databases/Pfam

Publications

The Pfam protein families database.

Finn RD., Mistry J., Tate J., Coggill P., Heger A., Pollington JE., Gavin OL., Gunasekaran P., Ceric G., Forslund K., Holm L., Sonnhammer EL., Eddy SR., Bateman A.,
Nucleic Acids Res. 2010

View Paper (PubMed) View Publication

The Pfam protein families database.

Punta M., Coggill PC., Eberhardt RY., Mistry J., Tate J., Boursnell C., Pang N., Forslund K., Ceric G., Clements J., Heger A., Holm L., Sonnhammer EL., Eddy SR., Bateman A., Finn RD.,
Nucleic Acids Res. 2012

View Paper (PubMed)

Pfam: the protein families database.

Finn RD,Bateman A,Clements J,Coggill P,Eberhardt RY,Eddy SR,Heger A,Hetherington K,Holm L,Mistry J,Sonnhammer EL,Tate J,Punta M
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by agb@ebi.ac.uk

Funds

The Wellcome Trust, UK (Charitable foundation)
European Commission under FP7 Grant Agreement (Government body)

Maintains

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK (Research institute)

Grant Number(s)

WT077044/Z/05/Z (The Wellcome Trust, UK)

Sanger Pfam Mirror

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