Databases > DOI:10.25504/FAIRsharing.sye5js

ready The Human Metabolome Database


General Information
The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.


Developed in Canada

Taxonomic range

Scope and data types

How to cite this record HMDB; The Human Metabolome Database; DOI: 10.25504/FAIRsharing.sye5js; Last edited: Feb. 22, 2018, 2:56 p.m.; Last accessed: Jun 24 2018 2:07 a.m.

Record updated: Feb. 22, 2018, 2:56 p.m.



Additional Information

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Conditions of Use

Applies to: Data use
  • Attribution required
  • No derivatives without permission

Data Access


HMDB: the Human Metabolome Database.

Wishart DS., Tzur D., Knox C., Eisner R., Guo AC., Young N., Cheng D., Jewell K., Arndt D., Sawhney S., Fung C., Nikolai L., Lewis M., Coutouly MA., Forsythe I., Tang P., Shrivastava S., Jeroncic K., Stothard P., Amegbey G., Block D., Hau DD., Wagner J., Miniaci J., Clements M., Gebremedhin M., Guo N., Zhang Y., Duggan GE., Macinnis GD., Weljie AM., Dowlatabadi R., Bamforth F., Clive D., Greiner R., Li L., Marrie T., Sykes BD., Vogel HJ., Querengesser L.,
Nucleic Acids Res. 2007

View Paper (PubMed)

HMDB: a knowledgebase for the human metabolome.

Wishart DS., Knox C., Guo AC., Eisner R., Young N., Gautam B., Hau DD., Psychogios N., Dong E., Bouatra S., Mandal R., Sinelnikov I., Xia J., Jia L., Cruz JA., Lim E., Sobsey CA., Shrivastava S., Huang P., Liu P., Fang L., Peng J., Fradette R., Cheng D., Tzur D., Clements M., Lewis A., De Souza A., Zuniga A., Dawe M., Xiong Y., Clive D., Greiner R., Nazyrova A., Shaykhutdinov R., Li L., Vogel HJ., Forsythe I.,
Nucleic Acids Res. 2009

View Paper (PubMed)

HMDB 3.0--The Human Metabolome Database in 2013.

Wishart DS., Jewison T., Guo AC., Wilson M., Knox C., Liu Y., Djoumbou Y., Mandal R., Aziat F., Dong E., Bouatra S., Sinelnikov I., Arndt D., Xia J., Liu P., Yallou F., Bjorndahl T., Perez-Pineiro R., Eisner R., Allen F., Neveu V., Greiner R., Scalbert A.,
Nucleic Acids Res. 2013

View Paper (PubMed)

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