databases > DOI:10.25504/FAIRsharing.sye5js

ready The Human Metabolome Database

Abbreviation:HMDB

General Information
The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.

Homepage http://www.hmdb.ca

Countries that developed this resource Canada

Taxonomic range





How to cite this record FAIRsharing.org: HMDB; The Human Metabolome Database; DOI: https://doi.org/10.25504/FAIRsharing.sye5js; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Apr 03 2020 5:04 a.m.


Record updated: July 15, 2018, 8:17 p.m. by The FAIRsharing Team.

Show edit history


In Collections
H2020 Phenome and Metabolome aNalysis (PhenoMenal) Project
Chemistry

Support

General

help http://www.hmdb.ca/about
twitter @WishartLab

Additional Information

Contact david.wishart@ualberta.ca


Access / Retrieve Data

Conditions of Use

Applies to: Data use
  • Attribution required
  • No derivatives without permission

Data Access

Download http://www.hmdb.ca/downloads



Publications

HMDB: the Human Metabolome Database.

Wishart DS., Tzur D., Knox C., Eisner R., Guo AC., Young N., Cheng D., Jewell K., Arndt D., Sawhney S., Fung C., Nikolai L., Lewis M., Coutouly MA., Forsythe I., Tang P., Shrivastava S., Jeroncic K., Stothard P., Amegbey G., Block D., Hau DD., Wagner J., Miniaci J., Clements M., Gebremedhin M., Guo N., Zhang Y., Duggan GE., Macinnis GD., Weljie AM., Dowlatabadi R., Bamforth F., Clive D., Greiner R., Li L., Marrie T., Sykes BD., Vogel HJ., Querengesser L.,
Nucleic Acids Res. 2007

View Paper (PubMed)

HMDB: a knowledgebase for the human metabolome.

Wishart DS., Knox C., Guo AC., Eisner R., Young N., Gautam B., Hau DD., Psychogios N., Dong E., Bouatra S., Mandal R., Sinelnikov I., Xia J., Jia L., Cruz JA., Lim E., Sobsey CA., Shrivastava S., Huang P., Liu P., Fang L., Peng J., Fradette R., Cheng D., Tzur D., Clements M., Lewis A., De Souza A., Zuniga A., Dawe M., Xiong Y., Clive D., Greiner R., Nazyrova A., Shaykhutdinov R., Li L., Vogel HJ., Forsythe I.,
Nucleic Acids Res. 2009

View Paper (PubMed)

HMDB 3.0--The Human Metabolome Database in 2013.

Wishart DS., Jewison T., Guo AC., Wilson M., Knox C., Liu Y., Djoumbou Y., Mandal R., Aziat F., Dong E., Bouatra S., Sinelnikov I., Arndt D., Xia J., Liu P., Yallou F., Bjorndahl T., Perez-Pineiro R., Eisner R., Allen F., Neveu V., Greiner R., Scalbert A.,
Nucleic Acids Res. 2013

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined



Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Maintains