Databases > DOI:10.25504/FAIRsharing.f0awr5

ready RegulonDB

General Information
RegulonDB is a model of the complex regulation of transcription initiation or regulatory network of the cell. On the other hand, it is also a model of the organization of the genes in transcription units, operons and simple and complex regulons. In this regard, RegulonDB is a computational model of mechanisms of transcriptional regulation.

How to cite this record: RegulonDB; RegulonDB; DOI:; Last edited: Feb. 22, 2018, 2:56 p.m.; Last accessed: Mar 19 2018 5:01 a.m.

This record is maintained by Heladia_Salgado

Record updated: Dec. 12, 2016, 11:26 p.m. by The FAIRsharing Team.


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RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).

Gama-Castro S., Salgado H., Peralta-Gil M., Santos-Zavaleta A., Muñiz-Rascado L., Solano-Lira H., Jimenez-Jacinto V., Weiss V., García-Sotelo JS., López-Fuentes A., Porrón-Sotelo L., Alquicira-Hernández S., Medina-Rivera A., Martínez-Flores I., Alquicira-Hernández K., Martínez-Adame R., Bonavides-Martínez C., Miranda-Ríos J., Huerta AM., Mendoza-Vargas A., Collado-Torres L., Taboada B., Vega-Alvarado L., Olvera M., Olvera L., Grande R., Morett E., Collado-Vides J.,
Nucleic Acids Res. 2011

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RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.

Salgado H,Peralta-Gil M,Gama-Castro S,Santos-Zavaleta A,Muniz-Rascado L,Garcia-Sotelo JS,Weiss V,Solano-Lira H,Martinez-Flores I,Medina-Rivera A,Salgado-Osorio G,Alquicira-Hernandez S,Alquicira-Hernandez K,Lopez-Fuentes A,Porron-Sotelo L,Huerta AM,Bonavides-Martinez C,Balderas-Martinez YI,Pannier L,Olvera M,Labastida A,Jimenez-Jacinto V,Vega-Alvarado L,Del Moral-Chavez V,Hernandez-Alvarez A,Morett E,Collado-Vides J
Nucleic Acids Res 2012

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RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.

Gama-Castro S,Salgado H,Santos-Zavaleta A,Ledezma-Tejeida D,Muniz-Rascado L,Garcia-Sotelo JS,Alquicira-Hernandez K,Martinez-Flores I,Pannier L,Castro-Mondragon JA,Medina-Rivera A,Solano-Lira H,Bonavides-Martinez C,Perez-Rueda E,Alquicira-Hernandez S,Porron-Sotelo L,Lopez-Fuentes A,Hernandez-Koutoucheva A,Del Moral-Chavez V,Rinaldi F,Collado-Vides J
Nucleic Acids Res 2015

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Grant Number(s)

  • 2U24GM077678-24A1 (US National Institutes of Health (NIH))

  • R01GM110597 (US National Institutes of Health (NIH))