databases > DOI:10.25504/FAIRsharing.dxj07r

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General Information
EBI Metagenomics has changed its name to MGnify to reflect a change in scope. This is a free-to-use resource aiming at supporting all metagenomics researchers. The service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. You can freely browse all the public data in the repository.

Homepage https://www.ebi.ac.uk/metagenomics/

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 2011

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How to cite this record FAIRsharing.org: MGnify; MGnify; DOI: https://doi.org/10.25504/FAIRsharing.dxj07r; Last edited: Feb. 11, 2020, 8:19 p.m.; Last accessed: Jan 26 2021 2:08 a.m.

Publication for citation  MGnify: the microbiome analysis resource in 2020. Mitchell AL,Almeida A,Beracochea M,Boland M,Burgin J,Cochrane G,Crusoe MR,Kale V,Potter SC,Richardson LJ,Sakharova E,Scheremetjew M,Korobeynikov A,Shlemov A,Kunyavskaya O,Lapidus A,Finn RD; Nucleic Acids Res ; 2019; 10.1093/nar/gkz1035;


This record is maintained by EBIMetagenomics

Record updated: Feb. 11, 2020, 8:18 p.m. by The FAIRsharing Team.

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Data Citation Implementation
EOSC-Life
RDA Covid-19 WG Resources


Tools

    No tools defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

Pipeline v.4.1 https://www.ebi.ac.uk/metagenomics/pipelines

Data Curation

Submit data https://www.ebi.ac.uk/metagenomics/submit

Data Access

Sample comparison https://www.ebi.ac.uk/metagenomics/compare
Text Search https://www.ebi.ac.uk/metagenomics/search
Sequence Search With HMMER https://www.ebi.ac.uk/metagenomics/sequence-search/search/phmmer
Browse Data https://www.ebi.ac.uk/metagenomics/browse

REST Web Services

MGnify API https://www.ebi.ac.uk/metagenomics/api/v1/


Publications

EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.

Hunter S,Corbett M,Denise H,Fraser M,Gonzalez-Beltran A,Hunter C,Jones P,Leinonen R,McAnulla C,Maguire E,Maslen J,Mitchell A,Nuka G,Oisel A,Pesseat S,Radhakrishnan R,Rocca-Serra P,Scheremetjew M,Sterk P,Vaughan D,Cochrane G,Field D,Sansone SA
Nucleic Acids Res 2014

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EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.

Mitchell AL,Scheremetjew M,Denise H,Potter S,Tarkowska A,Qureshi M,Salazar GA,Pesseat S,Boland MA,Hunter FMI,Ten Hoopen P,Alako B,Amid C,Wilkinson DJ,Curtis TP,Cochrane G,Finn RD
Nucleic Acids Res 2017

View Paper (PubMed) View Publication

MGnify: the microbiome analysis resource in 2020.

Mitchell AL,Almeida A,Beracochea M,Boland M,Burgin J,Cochrane G,Crusoe MR,Kale V,Potter SC,Richardson LJ,Sakharova E,Scheremetjew M,Korobeynikov A,Shlemov A,Kunyavskaya O,Lapidus A,Finn RD
Nucleic Acids Res 2019

View Paper (PubMed) View Publication

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Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • BB/I02612X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/M011755/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • FP7 grant MICROB3 (European Commission under FP7 Grant Agreement)