MGnify
Homepage https://www.ebi.ac.uk/metagenomics/
Developed in European Union
Created in 2011
Taxonomic range
Knowledge Domains BETA
Subjects BETA
User-defined Tags
How to cite this record FAIRsharing.org: MGnify; MGnify; DOI: https://doi.org/10.25504/FAIRsharing.dxj07r; Last edited: Jan. 17, 2019, 12:02 p.m.; Last accessed: Feb 19 2019 11:16 a.m.
Publication for citation EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Mitchell AL,Scheremetjew M,Denise H,Potter S,Tarkowska A,Qureshi M,Salazar GA,Pesseat S,Boland MA,Hunter FMI,Ten Hoopen P,Alako B,Amid C,Wilkinson DJ,Curtis TP,Cochrane G,Finn RD; Nucleic Acids Res ; 2017; 10.1093/nar/gkx967;
Record updated: Jan. 17, 2019, 12:01 p.m. by The FAIRsharing Team.
contact form | Metagenomics Contact Form |
online documentation | About MGnify |
@MGnifyDB |
Additional Information
Contact | General Contact |
Identifiers.org | MIR:00000535 |
TeSS training resources
Ebi metagenomics portal quick tour
Ebi metagenomics portal submitting metagenomics data to the european nucleotide archive
Conditions of Use
Applies to: Data useData Release
Pipeline v3.0 | https://www.ebi.ac.uk/metagenomics/pipelines |
Data Access
Submit data | https://www.ebi.ac.uk/metagenomics/submit |
Sample comparison | https://www.ebi.ac.uk/metagenomics/compare |
Text Search | https://www.ebi.ac.uk/metagenomics/search |
Sequence Search With HMMER | https://www.ebi.ac.uk/metagenomics/sequence-search/search/phmmer |
Browse Data | https://www.ebi.ac.uk/metagenomics/browse |
REST Web Services
MGnify API | https://www.ebi.ac.uk/metagenomics/api/v1/ |
EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.
Hunter S,Corbett M,Denise H,Fraser M,Gonzalez-Beltran A,Hunter C,Jones P,Leinonen R,McAnulla C,Maguire E,Maslen J,Mitchell A,Nuka G,Oisel A,Pesseat S,Radhakrishnan R,Rocca-Serra P,Scheremetjew M,Sterk P,Vaughan D,Cochrane G,Field D,Sansone SA
Nucleic Acids Res 2014
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.
Mitchell AL,Scheremetjew M,Denise H,Potter S,Tarkowska A,Qureshi M,Salazar GA,Pesseat S,Boland MA,Hunter FMI,Ten Hoopen P,Alako B,Amid C,Wilkinson DJ,Curtis TP,Cochrane G,Finn RD
Nucleic Acids Res 2017
Reporting Guidelines
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
- African Academy of Sciences Open Research Data Guidelines for Authors
- MNI Open Research
- Wellcome Open Research Data Guidelines
- Springer Nature Research Data Policy Type 1
- Springer Nature Research Data Policy Type 3 (for life sciences)
- Springer Nature - Research Data Policies
- F1000Research Data Policy
- Springer Nature Research Data Policy Type 4
- HRB Open Research
- GigaScience - Minimum Standards of Reporting Checklist
- Scientific Data Data Policy
- UCL Child Open Health Research
- Public Library of Science Recommended Data Repositories
- Springer Nature Research Data Policy Type 2 (for life sciences)
- BioMed Central - Minimum Standards of Reporting Checklist
- Gates Open Research Data Guidelines
- Springer Nature Research Data Policy Type 3
- Springer Nature Research Data Policy Type 2
Record Maintainer
This record is maintained by EBIMetagenomics
Funds
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
European Commission under FP7 Grant Agreement (Government body)
Maintains
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead
Grant Number(s)
BB/I02612X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/M011755/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
FP7 grant MICROB3 (European Commission under FP7 Grant Agreement)