Edits to 'https://fairsharing.org/FAIRsharing.dxj07r' by 'The FAIRsharing Team' at 20:18, 11 Feb 2020 (approved):
'supportLinks' has been modified:
Before:
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-submitting-metagenomics-data-to-the-european-nucleotide-archive
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-quick-tour
contact form|http://www.ebi.ac.uk/support/metagenomics
email|metagenomics-help@ebi.ac.uk
help|https://www.ebi.ac.uk/metagenomics/help
online documentation|https://www.ebi.ac.uk/metagenomics/about
online documentation|https://emg-docs.readthedocs.io/en/latest/
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-submitting-metagenomics-da
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-quick-tour
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-analysing-and-exploring-metagenomics-data
twitter|@MGnifyDB
After:
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-submitting-metagenomics-data-to-the-european-nucleotide-archive
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-quick-tour
contact form|https://www.ebi.ac.uk/support/metagenomics
email|metagenomics-help@ebi.ac.uk
help|https://www.ebi.ac.uk/metagenomics/help
online documentation|https://www.ebi.ac.uk/metagenomics/about
online documentation|https://emg-docs.readthedocs.io/en/latest/
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-submitting-metagenomics-da
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-quick-tour
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-analysing-and-exploring-metagenomics-data
twitter|@MGnifyDB
Added:
contact form|https://www.ebi.ac.uk/support/metagenomics
Removed:
contact form|http://www.ebi.ac.uk/support/metagenomics
'publications' has been modified:
Before:
EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.|Hunter S,Corbett M,Denise H,Fraser M,Gonzalez-Beltran A,Hunter C,Jones P,Leinonen R,McAnulla C,Maguire E,Maslen J,Mitchell A,Nuka G,Oisel A,Pesseat S,Radhakrishnan R,Rocca-Serra P,Scheremetjew M,Sterk P,Vaughan D,Cochrane G,Field D,Sansone SA|Nucleic Acids Res|2014
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.|Mitchell AL,Scheremetjew M,Denise H,Potter S,Tarkowska A,Qureshi M,Salazar GA,Pesseat S,Boland MA,Hunter FMI,Ten Hoopen P,Alako B,Amid C,Wilkinson DJ,Curtis TP,Cochrane G,Finn RD|Nucleic Acids Res|2017
After:
EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.|Hunter S,Corbett M,Denise H,Fraser M,Gonzalez-Beltran A,Hunter C,Jones P,Leinonen R,McAnulla C,Maguire E,Maslen J,Mitchell A,Nuka G,Oisel A,Pesseat S,Radhakrishnan R,Rocca-Serra P,Scheremetjew M,Sterk P,Vaughan D,Cochrane G,Field D,Sansone SA|Nucleic Acids Res|2014
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.|Mitchell AL,Scheremetjew M,Denise H,Potter S,Tarkowska A,Qureshi M,Salazar GA,Pesseat S,Boland MA,Hunter FMI,Ten Hoopen P,Alako B,Amid C,Wilkinson DJ,Curtis TP,Cochrane G,Finn RD|Nucleic Acids Res|2017
MGnify: the microbiome analysis resource in 2020.|Mitchell AL,Almeida A,Beracochea M,Boland M,Burgin J,Cochrane G,Crusoe MR,Kale V,Potter SC,Richardson LJ,Sakharova E,Scheremetjew M,Korobeynikov A,Shlemov A,Kunyavskaya O,Lapidus A,Finn RD|Nucleic Acids Res|2019
Added:
MGnify: the microbiome analysis resource in 2020.|Mitchell AL,Almeida A,Beracochea M,Boland M,Burgin J,Cochrane G,Crusoe MR,Kale V,Potter SC,Richardson LJ,Sakharova E,Scheremetjew M,Korobeynikov A,Shlemov A,Kunyavskaya O,Lapidus A,Finn RD|Nucleic Acids Res|2019
Removed:
'countries' has been modified:
Before:
European Union
After:
Austria
Belgium
Croatia
Czech Republic
Denmark
Finland
France
Germany
Greece
Hungary
Iceland
Israel
Italy
Lithuania
Luxembourg
Malta
Montenegro
Netherlands
Norway
Portugal
Republic of Ireland
Slovakia
Spain
Sweden
Switzerland
United Kingdom
Added:
Austria
Belgium
Croatia
Czech Republic
Denmark
Finland
France
Germany
Greece
Hungary
Iceland
Israel
Italy
Lithuania
Luxembourg
Malta
Montenegro
Netherlands
Norway
Portugal
Republic of Ireland
Slovakia
Spain
Sweden
Switzerland
United Kingdom
Removed:
European Union
Edits to 'https://fairsharing.org/FAIRsharing.dxj07r' by 'The FAIRsharing Team' at 22:05, 14 Mar 2019 (approved):
'contactEmail' has been modified:
Before: metagenomics-help@ebi.ac.uk
After: rdf@ebi.ac.uk
'contact' has been modified:
Before: General Contact
After: Robert D Finn
'supportLinks' has been modified:
Before:
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-submitting-metagenomics-data-to-the-european-nucleotide-archive
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-quick-tour
contact form|http://www.ebi.ac.uk/support/metagenomics
help|https://www.ebi.ac.uk/metagenomics/help
online documentation|https://www.ebi.ac.uk/metagenomics/about
online documentation|https://emg-docs.readthedocs.io/en/latest/
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-quick-tour
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-submitting-metagenomics-da
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-analysing-and-exploring-metagenomics-data
twitter|@MGnifyDB
After:
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-submitting-metagenomics-data-to-the-european-nucleotide-archive
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-quick-tour
contact form|http://www.ebi.ac.uk/support/metagenomics
email|metagenomics-help@ebi.ac.uk
help|https://www.ebi.ac.uk/metagenomics/help
online documentation|https://www.ebi.ac.uk/metagenomics/about
online documentation|https://emg-docs.readthedocs.io/en/latest/
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-submitting-metagenomics-da
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-quick-tour
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-analysing-and-exploring-metagenomics-data
twitter|@MGnifyDB
Added:
email|metagenomics-help@ebi.ac.uk
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.dxj07r' by 'The FAIRsharing Team' at 22:02, 14 Mar 2019 (approved):
'onto_disciplines' has been modified:
Before:
Biomedical Science
Environmental Sciences
Life Sciences
After:
Biodiversity
Biomedical Science
Data Submission, Annotation and Curation
Environmental Sciences
Life Sciences
Phylogenomics
Phylogeny
Taxonomy
Added:
Biodiversity
Data Submission, Annotation and Curation
Phylogenomics
Phylogeny
Taxonomy
Removed:
'supportLinks' has been modified:
Before:
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-submitting-metagenomics-data-to-the-european-nucleotide-archive
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-quick-tour
contact form|http://www.ebi.ac.uk/support/metagenomics
online documentation|https://www.ebi.ac.uk/metagenomics/about
twitter|@MGnifyDB
After:
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-submitting-metagenomics-data-to-the-european-nucleotide-archive
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-quick-tour
contact form|http://www.ebi.ac.uk/support/metagenomics
help|https://www.ebi.ac.uk/metagenomics/help
online documentation|https://www.ebi.ac.uk/metagenomics/about
online documentation|https://emg-docs.readthedocs.io/en/latest/
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-quick-tour
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-submitting-metagenomics-da
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-analysing-and-exploring-metagenomics-data
twitter|@MGnifyDB
Added:
help|https://www.ebi.ac.uk/metagenomics/help
online documentation|https://emg-docs.readthedocs.io/en/latest/
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-quick-tour
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-submitting-metagenomics-da
training|https://www.ebi.ac.uk/training/online/course/ebi-metagenomics-analysing-and-exploring-metagenomics-data
Removed:
'dataProcesses' has been modified:
Before:
Pipeline v3.0
Submit data
Sample comparison
Text Search
Sequence Search With HMMER
Browse Data
After:
Pipeline v.4.1
Submit data
Sample comparison
Text Search
Sequence Search With HMMER
Browse Data
Added:
Pipeline v.4.1
Removed:
Pipeline v3.0
'onto_domains' has been modified:
Before:
Annotation
DNA sequence
Gene prediction
Metagenome
Sequence annotation
gene
genome
ncRNA
rRNA_16S
After:
Annotation
DNA sequence
Gene prediction
Metagenome
Sequence annotation
gene
genome
microbiome
ncRNA
rRNA_16S
Added:
microbiome
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.dxj07r' by 'The FAIRsharing Team' at 12:01, 17 Jan 2019 (approved):
'organizations' has been modified:
Before:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
After:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
Added:
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
Removed:
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
'supportLinks' has been modified:
Before:
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-submitting-metagenomics-data-to-the-european-nucleotide-archive
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-quick-tour
contact form|http://www.ebi.ac.uk/support/metagenomics
online documentation|https://www.ebi.ac.uk/metagenomics/about
twitter|@EBImetagenomics
After:
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-submitting-metagenomics-data-to-the-european-nucleotide-archive
TeSS training|https://tess.elixir-europe.org/materials/ebi-metagenomics-portal-quick-tour
contact form|http://www.ebi.ac.uk/support/metagenomics
online documentation|https://www.ebi.ac.uk/metagenomics/about
twitter|@MGnifyDB
Added:
twitter|@MGnifyDB
Removed:
twitter|@EBImetagenomics
'licences' has been modified:
Before:
After:
EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Added:
EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Removed:
'dataProcesses' has been modified:
Before:
Pipeline v3.0
Submit data
Trimmomatic
QIIME
FranGeneScan
InterproScan
Sample comparison
Functional analysis
Taxonomy analysis
After:
Pipeline v3.0
Submit data
Sample comparison
Text Search
Sequence Search With HMMER
Browse Data
Added:
Text Search
Sequence Search With HMMER
Browse Data
Removed:
Trimmomatic
QIIME
FranGeneScan
InterproScan
Functional analysis
Taxonomy analysis
'miriam_id' has been modified:
Before:
After: MIR:00000535
'accessPoints' has been modified:
Before:
After:
REST|https://www.ebi.ac.uk/metagenomics/api/v1/|MGnify API
Added:
REST|https://www.ebi.ac.uk/metagenomics/api/v1/|MGnify API
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.dxj07r' by 'The FAIRsharing Team' at 15:07, 22 Aug 2018 (approved):
'shortname' has been modified:
Before: MGnify (formerly EBI Metagenomics)
After: MGnify
'name' has been modified:
Before: MGnify (formerly EBI Metagenomics)
After: MGnify
'description' has been modified:
Before: EBI Metagenomics has now changed its name to MGnify to reflect soon to come future updates. A new website is currently being trialed. https://www.ebi.ac.uk/metagenomics/beta/ EBI Metagenome is a free-to-use resource aiming at supporting all metagenomics researchers. The service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. You can freely browse all the public data in the repository.
After: EBI Metagenomics has changed its name to MGnify to reflect a change in scope. This is a free-to-use resource aiming at supporting all metagenomics researchers. The service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. You can freely browse all the public data in the repository.
Edits to 'https://fairsharing.org/FAIRsharing.dxj07r' by 'The FAIRsharing Team' at 19:17, 26 Jul 2018 (approved):
'organizations' has been modified:
Before:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|http://www.bbsrc.ac.uk/|Funds
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Maintains
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
After:
Biotechnology and Biological Sciences Research Council (BBSRC), UK|http://www.bbsrc.ac.uk/|Funds
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
Added:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Removed:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Maintains
'name' has been modified:
Before: EBI Metagenomics
After: MGnify (formerly EBI Metagenomics)
'contact' has been modified:
Before: EBI Metagenomics
After: General Contact
'miriam_id' has been modified:
Before: None
After:
'publications' has been modified:
Before:
EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.|Hunter S,Corbett M,Denise H,Fraser M,Gonzalez-Beltran A,Hunter C,Jones P,Leinonen R,McAnulla C,Maguire E,Maslen J,Mitchell A,Nuka G,Oisel A,Pesseat S,Radhakrishnan R,Rocca-Serra P,Scheremetjew M,Sterk P,Vaughan D,Cochrane G,Field D,Sansone SA|Nucleic Acids Res|2014
After:
EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.|Hunter S,Corbett M,Denise H,Fraser M,Gonzalez-Beltran A,Hunter C,Jones P,Leinonen R,McAnulla C,Maguire E,Maslen J,Mitchell A,Nuka G,Oisel A,Pesseat S,Radhakrishnan R,Rocca-Serra P,Scheremetjew M,Sterk P,Vaughan D,Cochrane G,Field D,Sansone SA|Nucleic Acids Res|2014
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.|Mitchell AL,Scheremetjew M,Denise H,Potter S,Tarkowska A,Qureshi M,Salazar GA,Pesseat S,Boland MA,Hunter FMI,Ten Hoopen P,Alako B,Amid C,Wilkinson DJ,Curtis TP,Cochrane G,Finn RD|Nucleic Acids Res|2017
Added:
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.|Mitchell AL,Scheremetjew M,Denise H,Potter S,Tarkowska A,Qureshi M,Salazar GA,Pesseat S,Boland MA,Hunter FMI,Ten Hoopen P,Alako B,Amid C,Wilkinson DJ,Curtis TP,Cochrane G,Finn RD|Nucleic Acids Res|2017
Removed:
'shortname' has been modified:
Before: EBI Metagenomics
After: MGnify (formerly EBI Metagenomics)
'description' has been modified:
Before: "EBI Metagenomics" is a free-to-use resource aiming at supporting all metagenomics researchers. The service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. You can freely browse all the public data in the repository.
After: EBI Metagenomics has now changed its name to MGnify to reflect soon to come future updates. A new website is currently being trialed. https://www.ebi.ac.uk/metagenomics/beta/ EBI Metagenome is a free-to-use resource aiming at supporting all metagenomics researchers. The service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. You can freely browse all the public data in the repository.