databases > DOI:10.25504/FAIRsharing.jwhdyr

ready ModBase database of comparative protein structure models

Abbreviation:ModBase

General Information
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that relies primarily on Modeller for fold assignment, sequence-structure alignment, model building, and model assessment (http://salilab.org/modeller/). ModBase currently contains almost 30 million reliable models for domains in 4.7 million unique protein sequences. ModBase allows users to compute or update comparative models on demand, through an interface to the ModWeb modeling server (http://salilab.org/modweb). ModBase models are also available through the Protein Model Portal (http://www.proteinmodelportal.org/).

Homepage http://salilab.org/modbase

Developed in United States

Created in 1998

Taxonomic range






How to cite this record FAIRsharing.org: ModBase; ModBase database of comparative protein structure models; DOI: https://doi.org/10.25504/FAIRsharing.jwhdyr; Last edited: Feb. 22, 2018, 2:57 p.m.; Last accessed: Sep 22 2018 1:35 p.m.


This record is maintained by salilab

Record updated: May 19, 2016, 1:49 p.m. by The FAIRsharing Team.



Support

General

Additional Information


Tools

Access / Retrieve Data

Conditions of Use





Publications

ModBase, a database of annotated comparative protein structure models, and associated resources.

Pieper U, Webb BM, Barkan DT, Schneidman-Duhovny D, Schlessinger A, Braberg H, Yang Z, Meng EC, Pettersen EF, Huang CC, Datta RS, Sampathkumar P, Madhusudhan MS, Sjölander K, Ferrin TE, Burley SK, Sali A
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined



Implementing Policies

This record is not implemented by any policy.


Credit