European Variation Archive

Abbreviation:EVA

Recommended

General Information

The European Variation Archive is an open-access archive that accepts submission of, and provides access to, all types of genetic variation data from all species. All users are able to download any dataset, or query our study catalogue via our variation table. Access to EVA data is also provided by RESTful web services for a variety of applications, such as annotation pipelines.

Homepage http://www.ebi.ac.uk/eva/

Countries that developed this resource Australia , France , Germany , New Zealand , United Kingdom , United States , Worldwide

Created in 2014

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

eLife Recommended Repositories and Standards

How to cite this record FAIRsharing.org: EVA; European Variation Archive; DOI: https://doi.org/10.25504/FAIRsharing.6824pv; Last edited: Jan. 17, 2019, 12:19 p.m.; Last accessed: Jul 21 2019 1:38 p.m.

This record is maintained by garys ORCID

Record updated: Jan. 17, 2019, 12:19 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.6824pv' by 'The FAIRsharing Team' at 12:19, 17 Jan 2019 (approved):

	'organizations' has been modified:
		Before:
			Genetic European Variation in Disease (GEUVADIS)|http://geevs.crg.eu|Maintains
			Principe Felipe Research Centre Computational Genomics Department (CIPF)|http://bioinfo.cipf.es|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Maintains
		After:
			Genetic European Variation in Disease (GEUVADIS)|http://geevs.crg.eu|Maintains
			Principe Felipe Research Centre Computational Genomics Department (CIPF)|http://bioinfo.cipf.es|Maintains
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Removed:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

	'supportLinks' has been modified:
		Before:
			contact form|https://www.ebi.ac.uk/eva/?Feedback
			help|https://www.ebi.ac.uk/eva/?Help
			twitter|@EBIvariation
		After:
			contact form|https://www.ebi.ac.uk/eva/?Feedback
			help|https://www.ebi.ac.uk/eva/?Help
			twitter|@evarchive
		Added:
			twitter|@evarchive
		Removed:
			twitter|@EBIvariation

	'licences' has been modified:
		Before:
		After:
			EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
		Added:
			EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
		Removed:

	'dataProcesses' has been modified:
		Before:
			Submit Data
			Study Browser
		After:
			Submit Data
			Study Browser
			Variant Browser
		Added:
			Variant Browser
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'tools' has been modified:
		Before:
		After:
			EBI GA4GH Beacon||https://www.ebi.ac.uk/eva/?GA4GH
		Added:
			EBI GA4GH Beacon||https://www.ebi.ac.uk/eva/?GA4GH
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.6824pv' by 'The FAIRsharing Team' at 11:43, 21 Nov 2018 (approved):

	'domains' has been modified:
		Before:
			Biomedical Science
			DNA structural variation
			Genetics
			Genomics
			Genotype
			Life Science
			Sequencing
		After:
			Biomedical Science
			DNA structural variation
			Genetic polymorphism
			Genetics
			Genomics
			Genotype
			Life Science
			Sequencing
		Added:
			Genetic polymorphism
		Removed:

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.6824pv' by 'The FAIRsharing Team' at 07:56, 27 Jul 2018 (approved):

	'related_databases' has been modified:
		Before:
			European Nucleotide Archive
			Database of Single Nucleotide Polymorphism
			UniProt Knowledgebase
			ClinVar
			Online Mendelian Inheritance in Man
			Leiden Open Variation Database
		After:
			European Nucleotide Archive
			The European Genome-phenome Archive
			Database of Single Nucleotide Polymorphism
			UniProt Knowledgebase
			ClinVar
			Online Mendelian Inheritance in Man
			Leiden Open Variation Database
		Added:
			The European Genome-phenome Archive
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.6824pv' by 'The FAIRsharing Team' at 07:24, 27 Jul 2018 (approved):

	'organizations' has been modified:
		Before:
			Genetic European Variation in Disease (GEUVADIS)|http://geevs.crg.eu|Maintains
			Principe Felipe Research Centre Computational Genomics Department (CIPF)|http://bioinfo.cipf.es|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
		After:
			Genetic European Variation in Disease (GEUVADIS)|http://geevs.crg.eu|Maintains
			Principe Felipe Research Centre Computational Genomics Department (CIPF)|http://bioinfo.cipf.es|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Maintains
		Added:
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Maintains
		Removed:

	'standardsImplemented' has been modified:
		Before:
		After:
			Sequence Ontology
			Human Genome Organization Gene Symbols
		Added:
			Sequence Ontology
			Human Genome Organization Gene Symbols
		Removed:

	'taxonomies' has been modified:
		Before:
			All
			Gallus gallus
			Homo sapiens
			Mus musculus
			Zea mays
		After:
			All
		Added:
		Removed:
			Gallus gallus
			Homo sapiens
			Mus musculus
			Zea mays

	'supportLinks' has been modified:
		Before:
			contact form|http://www.ebi.ac.uk/eva/?Contact
			online documentation|http://www.ebi.ac.uk/eva/?About
			twitter|@EBIvariation
		After:
			contact form|https://www.ebi.ac.uk/eva/?Feedback
			help|https://www.ebi.ac.uk/eva/?Help
			twitter|@EBIvariation
		Added:
			contact form|https://www.ebi.ac.uk/eva/?Feedback
			help|https://www.ebi.ac.uk/eva/?Help
		Removed:
			contact form|http://www.ebi.ac.uk/eva/?Contact
			online documentation|http://www.ebi.ac.uk/eva/?About

	'dataProcesses' has been modified:
		Before:
		After:
			Submit Data
			Study Browser
		Added:
			Submit Data
			Study Browser
		Removed:

	'related_databases' has been modified:
		Before:
			European Nucleotide Archive
			The European Genome-phenome Archive
			Database of Single Nucleotide Polymorphism
			UniProt Knowledgebase
			Online Mendelian Inheritance in Man
			Open Targets
		After:
			European Nucleotide Archive
			Database of Single Nucleotide Polymorphism
			UniProt Knowledgebase
			ClinVar
			Online Mendelian Inheritance in Man
			Leiden Open Variation Database
		Added:
			ClinVar
			Leiden Open Variation Database
		Removed:
			The European Genome-phenome Archive
			Open Targets

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			Transcriptome and genome sequencing uncovers functional variation in humans.|Lappalainen T,Sammeth M,Friedlander MR,'t Hoen PA,Monlong J,Rivas MA,Gonzalez-Porta M,Kurbatova N,Griebel T,Ferreira PG,Barann M,Wieland T,Greger L,van Iterson M,Almlof J,Ribeca P,Pulyakhina I,Esser D,Giger T,Tikhonov A,Sultan M,Bertier G,MacArthur DG,Lek M,Lizano E,Buermans HP,Padioleau I,Schwarzmayr T,Karlberg O,Ongen H,Kilpinen H,Beltran S,Gut M,Kahlem K,Amstislavskiy V,Stegle O,Pirinen M,Montgomery SB,Donnelly P,McCarthy MI,Flicek P,Strom TM,Lehrach H,Schreiber S,Sudbrak R,Carracedo A,Antonarakis SE,Hasler R,Syvanen AC,van Ommen GJ,Brazma A,Meitinger T,Rosenstiel P,Guigo R,Gut IG,Estivill X,Dermitzakis ET|Nature|2013
		After:
			Transcriptome and genome sequencing uncovers functional variation in humans.|Lappalainen T,Sammeth M,Friedlander MR,'t Hoen PA,Monlong J,Rivas MA,Gonzalez-Porta M,Kurbatova N,Griebel T,Ferreira PG,Barann M,Wieland T,Greger L,van Iterson M,Almlof J,Ribeca P,Pulyakhina I,Esser D,Giger T,Tikhonov A,Sultan M,Bertier G,MacArthur DG,Lek M,Lizano E,Buermans HP,Padioleau I,Schwarzmayr T,Karlberg O,Ongen H,Kilpinen H,Beltran S,Gut M,Kahlem K,Amstislavskiy V,Stegle O,Pirinen M,Montgomery SB,Donnelly P,McCarthy MI,Flicek P,Strom TM,Lehrach H,Schreiber S,Sudbrak R,Carracedo A,Antonarakis SE,Hasler R,Syvanen AC,van Ommen GJ,Brazma A,Meitinger T,Rosenstiel P,Guigo R,Gut IG,Estivill X,Dermitzakis ET|Nature|2013
			The European Bioinformatics Institute in 2016: Data growth and integration.|Cook CE,Bergman MT,Finn RD,Cochrane G,Birney E,Apweiler R|Nucleic Acids Res|2015
		Added:
			The European Bioinformatics Institute in 2016: Data growth and integration.|Cook CE,Bergman MT,Finn RD,Cochrane G,Birney E,Apweiler R|Nucleic Acids Res|2015
		Removed:

	'accessPoints' has been modified:
		Before:
		After:
			REST|https://www.ebi.ac.uk/eva/?API|EVA REST API
		Added:
			REST|https://www.ebi.ac.uk/eva/?API|EVA REST API
		Removed:

	'tools' has been modified:
		Before:
			Submit Data|1.0|http://www.ebi.ac.uk/eva/?Submit%20Data
			Study Browser|1.0|http://www.ebi.ac.uk/eva/?Study%20Browser
			VCF Browser|1.0|http://www.ebi.ac.uk/eva/?VCF%20Browser
		After:
		Added:
		Removed:
			Submit Data|1.0|http://www.ebi.ac.uk/eva/?Submit%20Data
			Study Browser|1.0|http://www.ebi.ac.uk/eva/?Study%20Browser
			VCF Browser|1.0|http://www.ebi.ac.uk/eva/?VCF%20Browser

In Collections

Data Citation Implementation

ELIXIR Core Data Resources and Deposition Databases

Support

General

contact form	Feedback / Survey
help	EVA Help Pages
twitter	@evarchive

Additional Information

Contact

Gary Saunders ORCID

Tools

EBI GA4GH Beacon

https://www.ebi.ac.uk/eva/?GA4GH

Access / Retrieve Data

Conditions of Use

Applies to: Data use

EBI Terms of Use

Data Curation

Submit Data

https://www.ebi.ac.uk/eva/?Submit%20Data

Data Access

Study Browser	https://www.ebi.ac.uk/eva/?Study-Browser&browserType=sgv
Variant Browser	https://www.ebi.ac.uk/eva/?Variant%20Browser

REST Web Services

EVA REST API

https://www.ebi.ac.uk/eva/?API

Publications

Transcriptome and genome sequencing uncovers functional variation in humans.

Lappalainen T,Sammeth M,Friedlander MR,'t Hoen PA,Monlong J,Rivas MA,Gonzalez-Porta M,Kurbatova N,Griebel T,Ferreira PG,Barann M,Wieland T,Greger L,van Iterson M,Almlof J,Ribeca P,Pulyakhina I,Esser D,Giger T,Tikhonov A,Sultan M,Bertier G,MacArthur DG,Lek M,Lizano E,Buermans HP,Padioleau I,Schwarzmayr T,Karlberg O,Ongen H,Kilpinen H,Beltran S,Gut M,Kahlem K,Amstislavskiy V,Stegle O,Pirinen M,Montgomery SB,Donnelly P,McCarthy MI,Flicek P,Strom TM,Lehrach H,Schreiber S,Sudbrak R,Carracedo A,Antonarakis SE,Hasler R,Syvanen AC,van Ommen GJ,Brazma A,Meitinger T,Rosenstiel P,Guigo R,Gut IG,Estivill X,Dermitzakis ET
Nature 2013

View Paper (PubMed) View Publication

The European Bioinformatics Institute in 2016: Data growth and integration.

Cook CE,Bergman MT,Finn RD,Cochrane G,Birney E,Apweiler R
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

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Metrics

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Implementing Policies

Credit

Record Maintainer

This record is maintained by garys ORCID

Maintains

Genetic European Variation in Disease (GEUVADIS) (Consortium)
Principe Felipe Research Centre Computational Genomics Department (CIPF) (Research institute)
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Government body)

European Variation Archive

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