How to cite this record
FAIRsharing.org: FlyMine; FlyMine; DOI: https://doi.org/10.25504/FAIRsharing.rhpjhv;
Last edited: Nov. 12, 2019, 9:26 a.m.; Last accessed: Jan 16 2021 11:17 p.m.
Publication for citation
FlyMine: an integrated database for Drosophila and Anopheles genomics.
Lyne R, Smith R, Rutherford K, Wakeling M, Varley A, Guillier F, Janssens H, Ji W, Mclaren P, North P, Rana D, Riley T, Sullivan J, Watkins X, Woodbridge M, Lilley K, Russell S, Ashburner M, Mizuguchi K, Micklem G.; Genome Biol ;
2007.
Edits to 'https://fairsharing.org/FAIRsharing.rhpjhv' by 'yochannah' at 16:59, 11 Nov 2019 (approved):
'accessPoints' has been modified:
Before:
REST|http://www.flymine.org/flymine/api.do|Web Service Client (Perl, Python, Ruby, Java)
After:
REST|https://www.flymine.org/flymine/api.do|Web Service Client (Perl, Python, Ruby, Java)
Added:
REST|https://www.flymine.org/flymine/api.do|Web Service Client (Perl, Python, Ruby, Java)
Removed:
REST|http://www.flymine.org/flymine/api.do|Web Service Client (Perl, Python, Ruby, Java)
'homepage' has been modified:
Before: http://www.flymine.org
After: https://www.flymine.org
Edits to 'https://fairsharing.org/FAIRsharing.rhpjhv' by 'The FAIRsharing Team' at 10:42, 13 Dec 2018 (approved):
'supportLinks' has been modified:
Before:
blog|https://intermineorg.wordpress.com/
help|https://tess.elixir-europe.org/materials/intermine-user-tutorial
help|https://tess.elixir-europe.org/materials/intermine-user-manual
help|https://intermineorg.wordpress.com/flymine/help/
help|https://tess.elixir-europe.org/materials/flymine-intro-videos
online documentation|http://www.flymine.org/flymine/dataCategories.do
online documentation|https://intermineorg.wordpress.com/flymine/about/
tess training|https://tess.elixir-europe.org/materials/flymine-intro-videos
After:
TeSS training|https://tess.elixir-europe.org/materials/flymine-intro-videos
TeSS training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
TeSS training|https://tess.elixir-europe.org/materials/intermine-user-manual
blog|https://intermineorg.wordpress.com/
help|https://intermineorg.wordpress.com/flymine/help/
online documentation|https://intermineorg.wordpress.com/flymine/about/
online documentation|http://www.flymine.org/flymine/dataCategories.do
Added:
TeSS training|https://tess.elixir-europe.org/materials/flymine-intro-videos
TeSS training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
TeSS training|https://tess.elixir-europe.org/materials/intermine-user-manual
Removed:
help|https://tess.elixir-europe.org/materials/intermine-user-tutorial
help|https://tess.elixir-europe.org/materials/intermine-user-manual
help|https://tess.elixir-europe.org/materials/flymine-intro-videos
tess training|https://tess.elixir-europe.org/materials/flymine-intro-videos
Edits to 'https://fairsharing.org/FAIRsharing.rhpjhv' by 'The FAIRsharing Team' at 21:16, 12 Dec 2018 (approved):
'supportLinks' has been modified:
Before:
blog|https://intermineorg.wordpress.com/
help|https://tess.elixir-europe.org/materials/flymine-intro-videos
help|https://intermineorg.wordpress.com/flymine/help/
online documentation|https://intermineorg.wordpress.com/flymine/about/
online documentation|http://www.flymine.org/flymine/dataCategories.do
tess training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
tess training|https://tess.elixir-europe.org/materials/intermine-user-manual
After:
blog|https://intermineorg.wordpress.com/
help|https://tess.elixir-europe.org/materials/intermine-user-tutorial
help|https://tess.elixir-europe.org/materials/intermine-user-manual
help|https://intermineorg.wordpress.com/flymine/help/
help|https://tess.elixir-europe.org/materials/flymine-intro-videos
online documentation|http://www.flymine.org/flymine/dataCategories.do
online documentation|https://intermineorg.wordpress.com/flymine/about/
tess training|https://tess.elixir-europe.org/materials/flymine-intro-videos
Added:
help|https://tess.elixir-europe.org/materials/intermine-user-tutorial
help|https://tess.elixir-europe.org/materials/intermine-user-manual
tess training|https://tess.elixir-europe.org/materials/flymine-intro-videos
Removed:
tess training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
tess training|https://tess.elixir-europe.org/materials/intermine-user-manual
Edits to 'https://fairsharing.org/FAIRsharing.rhpjhv' by 'The FAIRsharing Team' at 21:16, 12 Dec 2018 (approved):
'related_databases' has been modified:
Before:
modMine
MouseMine @ MGI
RatMine
WormMine
YeastMine
ZebrafishMine
HumanMine
After:
FlyBase
IntAct molecular interaction database
modMine
GenomeRNAi
Berkeley Drosophila Genome Project EST database
ArrayExpress
Integrated resource of protein families, domains and functional sites
Reactome - a curated knowledgebase of biological pathways
Ensembl
Homologene
Biological General Repository for Interaction Datasets
Protein ANalysis THrough Evolutionary Relationships: Classification of Genes and Proteins
UniProt Knowledgebase
miRBase Sequence Database
MouseMine @ MGI
Kyoto Encyclopedia of Genes and Genomes
Online Mendelian Inheritance in Man
RatMine
WormMine
YeastMine
ZebrafishMine
HumanMine
Added:
FlyBase
IntAct molecular interaction database
GenomeRNAi
Berkeley Drosophila Genome Project EST database
ArrayExpress
Integrated resource of protein families, domains and functional sites
Reactome - a curated knowledgebase of biological pathways
Ensembl
Homologene
Biological General Repository for Interaction Datasets
Protein ANalysis THrough Evolutionary Relationships: Classification of Genes and Proteins
UniProt Knowledgebase
miRBase Sequence Database
Kyoto Encyclopedia of Genes and Genomes
Online Mendelian Inheritance in Man
Removed:
'supportLinks' has been modified:
Before:
blog|https://intermineorg.wordpress.com/
help|https://intermineorg.wordpress.com/flymine/help/
online documentation|http://www.flymine.org/flymine/dataCategories.do
online documentation|https://intermineorg.wordpress.com/flymine/about/
tess training|https://tess.elixir-europe.org/materials/flymine-intro-videos
After:
blog|https://intermineorg.wordpress.com/
help|https://tess.elixir-europe.org/materials/flymine-intro-videos
help|https://intermineorg.wordpress.com/flymine/help/
online documentation|https://intermineorg.wordpress.com/flymine/about/
online documentation|http://www.flymine.org/flymine/dataCategories.do
tess training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
tess training|https://tess.elixir-europe.org/materials/intermine-user-manual
Added:
help|https://tess.elixir-europe.org/materials/flymine-intro-videos
tess training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
tess training|https://tess.elixir-europe.org/materials/intermine-user-manual
Removed:
tess training|https://tess.elixir-europe.org/materials/flymine-intro-videos
Edits to 'https://fairsharing.org/FAIRsharing.rhpjhv' by 'The FAIRsharing Team' at 14:44, 15 Nov 2018 (approved):
'licences' has been modified:
Before:
GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Data
After:
GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Software
Added:
GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Software
Removed:
GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Data
'supportLinks' has been modified:
Before:
blog|https://intermineorg.wordpress.com/
help|https://intermineorg.wordpress.com/flymine/help/
online documentation|http://www.flymine.org/flymine/dataCategories.do
online documentation|https://intermineorg.wordpress.com/flymine/about/
twitter|@intermineorg
After:
blog|https://intermineorg.wordpress.com/
help|https://intermineorg.wordpress.com/flymine/help/
online documentation|http://www.flymine.org/flymine/dataCategories.do
online documentation|https://intermineorg.wordpress.com/flymine/about/
tess training|https://tess.elixir-europe.org/materials/flymine-intro-videos
Added:
tess training|https://tess.elixir-europe.org/materials/flymine-intro-videos
Removed:
twitter|@intermineorg
Edits to 'https://fairsharing.org/FAIRsharing.rhpjhv' by 'The FAIRsharing Team' at 16:37, 07 Nov 2018 (approved):
'supportLinks' has been modified:
Before:
blog|https://intermineorg.wordpress.com/
contact form|http://www.flymine.org/flymine/mymine.do
twitter|@intermineorg
After:
blog|https://intermineorg.wordpress.com/
help|https://intermineorg.wordpress.com/flymine/help/
online documentation|http://www.flymine.org/flymine/dataCategories.do
online documentation|https://intermineorg.wordpress.com/flymine/about/
twitter|@intermineorg
Added:
help|https://intermineorg.wordpress.com/flymine/help/
online documentation|http://www.flymine.org/flymine/dataCategories.do
online documentation|https://intermineorg.wordpress.com/flymine/about/
Removed:
contact form|http://www.flymine.org/flymine/mymine.do
'dataProcesses' has been modified:
Before:
Perl
After:
Search within genomic regions
Advanced Search (query builder)
Search against a list
Search via pre-defined queries
Added:
Search within genomic regions
Advanced Search (query builder)
Search against a list
Search via pre-defined queries
Removed:
Perl
'contact' has been modified:
Before: Help desk
After: FlyMine help desk
'miriam_id' has been modified:
Before: None
After:
'domains' has been modified:
Before:
Gene
Life Science
After:
Gene
Genomics
Life Science
Protein
Protein interactions
Added:
Genomics
Protein
Protein interactions
Removed:
'accessPoints' has been modified:
Before:
REST|http://www.flymine.org/query/service/|RESTful
After:
REST|http://www.flymine.org/flymine/api.do|Web Service Client (Perl, Python, Ruby, Java)
Added:
REST|http://www.flymine.org/flymine/api.do|Web Service Client (Perl, Python, Ruby, Java)
Removed:
REST|http://www.flymine.org/query/service/|RESTful
'tools' has been modified:
Before:
API Clients (Javascript, Python, Perl, Java, Ruby)|stable|http://intermine.readthedocs.io/en/latest/web-services/
After:
Added:
Removed:
API Clients (Javascript, Python, Perl, Java, Ruby)|stable|http://intermine.readthedocs.io/en/latest/web-services/
Edits to 'https://fairsharing.org/FAIRsharing.rhpjhv' by 'The FAIRsharing Team' at 17:26, 18 Aug 2016 (approved):
'description' has been modified:
Before: An integrated database for Drosophila genomics
After: FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Integrating data makes it possible to run sophisticated data mining queries that span domains of biological knowledge. Support links have changed: Previous values: @intermineorg New values: @intermineorg http://www.flymine.org/flymine/mymine.do Data processes have changed: Previous values: New values: Perl Organisations have changed: Previous values: University of Cambridge|UK New values: Cambridge Systems Biology Centre|University of Cambridge|UK National Human Genome Research Institute (NHGRI)|NIH The Wellcome Trust