Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'The FAIRsharing Team' at 13:25, 11 Mar 2021 (approved):
'standardsImplemented' has been modified:
Before:
Protein Data Bank Format
UniProtKB XML Format
Bioschemas
FASTA Sequence Format
After:
Protein Data Bank Format
UniProtKB XML Format
Bioschemas
FASTA Sequence Format
JavaScript Object Notation
Added:
JavaScript Object Notation
Removed:
'related_databases' has been modified:
Before:
Eukaryotic Linear Motifs
Intrinsically Disordered proteins with Extensive Annotations and Literature
Pfam
Gene3D
Integrated resource of protein families, domains and functional sites
STRING
Database of Protein Disorder
RCSB Protein Data Bank
UniProt Knowledgebase
CATH
Mutual Folding Induced by Binding Database
Disordered Binding Sites Database
Database of fuzzy protein complexes
After:
Eukaryotic Linear Motifs
Intrinsically Disordered proteins with Extensive Annotations and Literature
Pfam
Gene3D
Integrated resource of protein families, domains and functional sites
Protein Data Bank in Europe
STRING
Database of Protein Disorder
UniProt Knowledgebase
CATH
Mutual Folding Induced by Binding Database
Disordered Binding Sites Database
Database of fuzzy protein complexes
Added:
Protein Data Bank in Europe
Removed:
RCSB Protein Data Bank
'supportLinks' has been modified:
Before:
contact form|http://mobidb.bio.unipd.it/
email|biocomp@bio.unipd.it
online documentation|http://mobidb.bio.unipd.it/about
twitter|@BiocomputingUP
wikipedia|https://en.wikipedia.org/wiki/MobiDB
After:
email|MobiDB@ngp-net.bio.unipd.it
help|https://mobidb.bio.unipd.it/help/output
online documentation|https://mobidb.bio.unipd.it/about
online documentation|https://mobidb.bio.unipd.it/statistics
online documentation|https://mobidb.bio.unipd.it/releaseNotes
wikipedia|https://en.wikipedia.org/wiki/MobiDB
Added:
email|MobiDB@ngp-net.bio.unipd.it
help|https://mobidb.bio.unipd.it/help/output
online documentation|https://mobidb.bio.unipd.it/about
online documentation|https://mobidb.bio.unipd.it/statistics
online documentation|https://mobidb.bio.unipd.it/releaseNotes
Removed:
contact form|http://mobidb.bio.unipd.it/
email|biocomp@bio.unipd.it
online documentation|http://mobidb.bio.unipd.it/about
twitter|@BiocomputingUP
'description' has been modified:
Before: A database of protein disorder and mobility annotations. MobiDB was designed to offer a centralized resource for annotations of intrinsic protein disorder. The database features three levels of annotation: manually curated, indirect and predicted. Manually curated data is extracted from the DisProt database. Indirect data is inferred from PDB structures that are considered an indication of intrinsic disorder. The 10 predictors currently included (three ESpritz flavors, two IUPred flavors, two DisEMBL flavors, GlobPlot, VSL2b and JRONN) enable MobiDB to provide disorder annotations for every protein in absence of more reliable data. The new version also features a consensus annotation and classification for long disordered regions. In order to complement the disorder annotations, MobiDB features additional annotations from external sources. Annotations from the UniProt database include post-translational modifications and linear motifs. Pfam annotations are displayed in graphical form and are link-enabled, allowing the user to visit the corresponding Pfam page for further information. Experimental protein?protein interactions are also classified for disorder content.
After: MobiDB is a database of intrinsically disordered regions (IDRs) and related features from various sources and prediction tools. Different levels of reliability and different features are reported as different and independent annotations. The database features three levels of annotation: manually curated, indirect and predicted. MobiDB annotates the binding modes of disordered proteins, whether they undergo disorder-to-order transitions or remain disordered in the bound state. In addition, disordered regions undergoing liquid-liquid phase separation or post-translational modifications are defined.
'licences' has been modified:
Before:
Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)|https://creativecommons.org/licenses/by-nc/4.0/|Data
After:
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
MobiDB Licence Information|https://mobidb.bio.unipd.it/about/license|Data
Added:
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
MobiDB Licence Information|https://mobidb.bio.unipd.it/about/license|Data
Removed:
Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)|https://creativecommons.org/licenses/by-nc/4.0/|Data
'tools' has been modified:
Before:
MobiDB lite||http://protein.bio.unipd.it/mobidblite/
Mobi 2.0||http://protein.bio.unipd.it/mobi2/
DisEmbl||http://dis.embl.de
ESpritz||http://protein.bio.unipd.it/espritz/
GlobPlot2|2|http://globplot.embl.de
IUPred2||https://iupred2a.elte.hu
Jronn||https://biojava.org/docs/api4.2.1/org/biojava/nbio/ronn/Jronn.html
VSL2b||http://www.dabi.temple.edu/disprot/predictorVSL2.php
Pfilt||http://bioinfadmin.cs.ucl.ac.uk/downloads/pfilt/
SEG||http://www.biology.wustl.edu/gcg/seg.html
After:
MobiDB-lite||https://github.com/BioComputingUP/MobiDB-lite
FLIPPER||https://github.com/BioComputingUP/FLIPPER
Added:
MobiDB-lite||https://github.com/BioComputingUP/MobiDB-lite
FLIPPER||https://github.com/BioComputingUP/FLIPPER
Removed:
MobiDB lite||http://protein.bio.unipd.it/mobidblite/
Mobi 2.0||http://protein.bio.unipd.it/mobi2/
DisEmbl||http://dis.embl.de
ESpritz||http://protein.bio.unipd.it/espritz/
GlobPlot2|2|http://globplot.embl.de
IUPred2||https://iupred2a.elte.hu
Jronn||https://biojava.org/docs/api4.2.1/org/biojava/nbio/ronn/Jronn.html
VSL2b||http://www.dabi.temple.edu/disprot/predictorVSL2.php
Pfilt||http://bioinfadmin.cs.ucl.ac.uk/downloads/pfilt/
SEG||http://www.biology.wustl.edu/gcg/seg.html
'onto_disciplines' has been modified:
Before:
Life Science
After:
Biology
Added:
Biology
Removed:
Life Science
'onto_domains' has been modified:
Before:
Intrinsically Disordered Proteins
curated information
protein
structure
After:
Intrinsically Disordered Proteins
Structure
binding
curated information
post-translational protein modification
protein
structure
Added:
Structure
binding
post-translational protein modification
Removed:
'dataProcesses' has been modified:
Before:
Automated curation, data curation,
Monthly release, data release,
search, data access, http://mobidb.bio.unipd.it/
Download, data access, http://mobidb.bio.unipd.it/dataset
After:
Browse and Search, data access, https://mobidb.bio.unipd.it/browse
Added:
Browse and Search, data access, https://mobidb.bio.unipd.it/browse
Removed:
Automated curation, data curation,
Monthly release, data release,
search, data access, http://mobidb.bio.unipd.it/
Download, data access, http://mobidb.bio.unipd.it/dataset
'publications' has been modified:
Before:
MobiDB: a comprehensive database of intrinsic protein disorder annotations.|Di Domenico T, Walsh I, Martin AJ, Tosatto SC.|Bioinformatics|2012
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins.|Emilio Potenza, Toms Di Domenico, Ian Walsh, and Silvio C.E. Tosatto|Nucleic Acids Research|2014
MobiDB 3.0: More annotations for intrinsic disorder, conformational diversity and interactions in proteins|Piovesan, D, Tabaro, F, Paladin, F, Necci, M, Mieti, I, Camilloni, C, Davey, N, Dosztanyi, Z, Meszaros, B, Monzon, A, Parisi, G, Schad, E, Sormanni, P, Tompa, P, Vendruscolo, M, Vranken, W, Tosatto, SCE |Nucleic Acids Research|2017
After:
MobiDB: a comprehensive database of intrinsic protein disorder annotations.|Di Domenico T, Walsh I, Martin AJ, Tosatto SC.|Bioinformatics|2012
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins.|Emilio Potenza, Toms Di Domenico, Ian Walsh, and Silvio C.E. Tosatto|Nucleic Acids Research|2014
MobiDB 3.0: More annotations for intrinsic disorder, conformational diversity and interactions in proteins|Piovesan, D, Tabaro, F, Paladin, F, Necci, M, Mieti, I, Camilloni, C, Davey, N, Dosztanyi, Z, Meszaros, B, Monzon, A, Parisi, G, Schad, E, Sormanni, P, Tompa, P, Vendruscolo, M, Vranken, W, Tosatto, SCE |Nucleic Acids Research|2017
MobiDB: intrinsically disordered proteins in 2021.|Piovesan D,Necci M,Escobedo N,Monzon AM,Hatos A,Micetic I,Quaglia F,Paladin L,Ramasamy P,Dosztanyi Z,Vranken WF,Davey NE,Parisi G,Fuxreiter M,Tosatto SCE|Nucleic Acids Res|2020
Added:
MobiDB: intrinsically disordered proteins in 2021.|Piovesan D,Necci M,Escobedo N,Monzon AM,Hatos A,Micetic I,Quaglia F,Paladin L,Ramasamy P,Dosztanyi Z,Vranken WF,Davey NE,Parisi G,Fuxreiter M,Tosatto SCE|Nucleic Acids Res|2020
Removed:
'accessPoints' has been modified:
Before:
REST|http://mobidb.bio.unipd.it/ws|REST
After:
REST|https://mobidb.bio.unipd.it/help/apidoc|API Documentation
Added:
REST|https://mobidb.bio.unipd.it/help/apidoc|API Documentation
Removed:
REST|http://mobidb.bio.unipd.it/ws|REST
'homepage' has been modified:
Before: http://mobidb.bio.unipd.it/
After: https://mobidb.bio.unipd.it
Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'The FAIRsharing Team' at 09:04, 04 Aug 2018 (approved):
'miriam_id' has been modified:
Before: None
After:
'related_databases' has been modified:
Before:
Eukaryotic Linear Motifs
Intrinsically Disordered proteins with Extensive Annotations and Literature
Pfam Protein Families
Database of Protein Disorder
RCSB Protein Data Bank
UniProt Knowledgebase
CATH Protein Structure Classification
Mutual Folding Induced by Binding Database
Disordered Binding Sites Database
Database of fuzzy protein complexes
After:
Eukaryotic Linear Motifs
Intrinsically Disordered proteins with Extensive Annotations and Literature
Pfam Protein Families
Gene3D
Database of Protein Disorder
RCSB Protein Data Bank
UniProt Knowledgebase
CATH Protein Structure Classification
Mutual Folding Induced by Binding Database
Disordered Binding Sites Database
Database of fuzzy protein complexes
Added:
Gene3D
Removed:
'tools' has been modified:
Before:
MobiDB lite||http://protein.bio.unipd.it/mobidblite/
Mobi 2.0||http://protein.bio.unipd.it/mobi2/
After:
MobiDB lite||http://protein.bio.unipd.it/mobidblite/
Mobi 2.0||http://protein.bio.unipd.it/mobi2/
DisEmbl||http://dis.embl.de
ESpritz||http://protein.bio.unipd.it/espritz/
GlobPlot2|2|http://globplot.embl.de
IUPred2||https://iupred2a.elte.hu
Jronn||https://biojava.org/docs/api4.2.1/org/biojava/nbio/ronn/Jronn.html
VSL2b||http://www.dabi.temple.edu/disprot/predictorVSL2.php
Pfilt||http://bioinfadmin.cs.ucl.ac.uk/downloads/pfilt/
SEG||http://www.biology.wustl.edu/gcg/seg.html
Added:
DisEmbl||http://dis.embl.de
ESpritz||http://protein.bio.unipd.it/espritz/
GlobPlot2|2|http://globplot.embl.de
IUPred2||https://iupred2a.elte.hu
Jronn||https://biojava.org/docs/api4.2.1/org/biojava/nbio/ronn/Jronn.html
VSL2b||http://www.dabi.temple.edu/disprot/predictorVSL2.php
Pfilt||http://bioinfadmin.cs.ucl.ac.uk/downloads/pfilt/
SEG||http://www.biology.wustl.edu/gcg/seg.html
Removed:
'dataProcesses' has been modified:
Before:
Automated curation
Monthly release
search
After:
Automated curation
Monthly release
search
Download
Added:
Download
Removed:
'organizations' has been modified:
Before:
University of Padova, Padova PD, Italy|http://www.unipd.it/en/|Funds
After:
University of Padova, Padova PD, Italy|http://www.unipd.it/en/|Maintains
European Commission Horizon2020 Programme|https://ec.europa.eu/programmes/horizon2020/|Funds
Added:
University of Padova, Padova PD, Italy|http://www.unipd.it/en/|Maintains
European Commission Horizon2020 Programme|https://ec.europa.eu/programmes/horizon2020/|Funds
Removed:
University of Padova, Padova PD, Italy|http://www.unipd.it/en/|Funds
Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'The FAIRsharing Team' at 19:27, 17 Oct 2017 (approved):
'licences' has been modified:
Before:
Creative Commons Attribution-NonCommercial (CC-BY-NC) 4.0 International | Undefined
After:
Creative Commons Attribution-NonCommercial (CC-BY-NC) 4.0 International | Data
Added:
Creative Commons Attribution-NonCommercial (CC-BY-NC) 4.0 International | Data
Removed:
Creative Commons Attribution-NonCommercial (CC-BY-NC) 4.0 International | Undefined
Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'The FAIRsharing Team' at 14:14, 17 Oct 2017 (approved):
'related_databases' has been modified:
Before:
biodbcore-000033|Eukaryotic Linear Motifs
biodbcore-000052|Intrinsically Disordered proteins with Extensive Annotations and Literature
biodbcore-000081|Pfam Protein Families
biodbcore-000369|Database of Protein Disorder
biodbcore-000511|RCSB Protein Data Bank
biodbcore-000544|UniProt Knowledgebase
biodbcore-000550|CATH Protein Structure Classification
After:
biodbcore-000033|Eukaryotic Linear Motifs
biodbcore-000052|Intrinsically Disordered proteins with Extensive Annotations and Literature
biodbcore-000081|Pfam Protein Families
biodbcore-000369|Database of Protein Disorder
biodbcore-000511|RCSB Protein Data Bank
biodbcore-000544|UniProt Knowledgebase
biodbcore-000550|CATH Protein Structure Classification
biodbcore-001003|Mutual Folding Induced by Binding Database
biodbcore-001009|Disordered Binding Sites Database
Added:
biodbcore-001003|Mutual Folding Induced by Binding Database
biodbcore-001009|Disordered Binding Sites Database
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'The FAIRsharing Team' at 13:12, 17 Oct 2017 (approved):
'tools' has been modified:
Before:
Mutual Folding Induced by Binding
Disordered Binding Sites
MobiDB lite
Mobi 2.0
After:
MobiDB lite
Mobi 2.0
Added:
Removed:
Mutual Folding Induced by Binding
Disordered Binding Sites
Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'The FAIRsharing Team' at 13:11, 17 Oct 2017 (approved):
'tools' has been modified:
Before:
DisProt
Pfam
PDB
SIFTS
IDEAL
FuzDB
Mutual Folding Induced by Binding
Disordered Binding Sites
ELM
CATH
UniProt
MobiDB lite
Mobi 2.0
RCI
ANCHOR
FESS
RING
DisEMBL
ESpritz
Globplot
IUPred
Jronn
VSL2B
Pfilt
SEG
After:
Mutual Folding Induced by Binding
Disordered Binding Sites
MobiDB lite
Mobi 2.0
Added:
Removed:
DisProt
Pfam
PDB
SIFTS
IDEAL
FuzDB
ELM
CATH
UniProt
RCI
ANCHOR
FESS
RING
DisEMBL
ESpritz
Globplot
IUPred
Jronn
VSL2B
Pfilt
SEG
Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'ivanmicetic' at 12:57, 17 Oct 2017 (approved):
'tools' has been modified:
Before:
DisProt
Pfam
PDB
SIFTS
IDEAL
FuzDB
Mutual Folding Induced by Binding
Disordered Binding Sites
ELM
CATH
UniProt
MobiDB lite
Mobi 2.0
RCI
ANCHOR
FESS
RING
DisEMBL
ESpritz
Globplot
After:
DisProt
Pfam
PDB
SIFTS
IDEAL
FuzDB
Mutual Folding Induced by Binding
Disordered Binding Sites
ELM
CATH
UniProt
MobiDB lite
Mobi 2.0
RCI
ANCHOR
FESS
RING
DisEMBL
ESpritz
Globplot
IUPred
Jronn
VSL2B
Pfilt
SEG
Added:
IUPred
Jronn
VSL2B
Pfilt
SEG
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'ivanmicetic' at 12:56, 17 Oct 2017 (approved):
'licences' has been modified:
Before:
Creative Commons Attribution-NonCommercial (CC-BY-NC) 4.0 International
C
r
e
a
t
i
v
e
C
o
m
m
o
n
s
A
t
t
r
i
b
u
t
i
o
n
-
N
o
n
C
o
m
m
e
r
c
i
a
l
(
C
C
-
B
Y
-
N
C
)
4
.
0
I
n
t
e
r
n
a
t
i
o
n
a
l
|
U
n
d
e
f
i
n
e
d
After:
Creative Commons Attribution-NonCommercial (CC-BY-NC) 4.0 International
Added:
Removed:
C
r
e
a
t
i
v
e
C
o
m
m
o
n
s
A
t
t
r
i
b
u
t
i
o
n
-
N
o
n
C
o
m
m
e
r
c
i
a
l
(
C
C
-
B
Y
-
N
C
)
4
.
0
I
n
t
e
r
n
a
t
i
o
n
a
l
|
U
n
d
e
f
i
n
e
d
Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'ivanmicetic' at 12:30, 17 Oct 2017 (approved):
'tools' has been modified:
Before:
DisProt
Pfam
PDB
SIFTS
IDEAL
FuzDB
Mutual Folding Induced by Binding
Disordered Binding Sites
ELM
CATH
UniProt
MobiDB lite
Mobi 2.0
RCI
ANCHOR
FESS
RING
DisEMBL
ESpritz
Globplot
After:
DisProt
Pfam
PDB
SIFTS
IDEAL
FuzDB
Mutual Folding Induced by Binding
Disordered Binding Sites
ELM
CATH
UniProt
MobiDB lite
Mobi 2.0
RCI
ANCHOR
FESS
RING
DisEMBL
ESpritz
Globplot
IUPred
Jronn
VSL2B
Pfilt
SEG
Added:
IUPred
Jronn
VSL2B
Pfilt
SEG
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'ivanmicetic' at 12:26, 17 Oct 2017 (approved):
'tools' has been modified:
Before:
DisProt
Pfam
PDB
SIFTS
IDEAL
FuzDB
Mutual Folding Induced by Binding
Disordered Binding Sites
ELM
CATH
UniProt
After:
DisProt
Pfam
PDB
SIFTS
IDEAL
FuzDB
Mutual Folding Induced by Binding
Disordered Binding Sites
ELM
CATH
UniProt
MobiDB lite
Mobi 2.0
RCI
ANCHOR
FESS
RING
DisEMBL
ESpritz
Globplot
Added:
MobiDB lite
Mobi 2.0
RCI
ANCHOR
FESS
RING
DisEMBL
ESpritz
Globplot
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'ivanmicetic' at 11:07, 17 Oct 2017 (approved):
'description' has been modified:
Before: A database of protein disorder and mobility annotations. MobiDB was designed to offer a centralized resource for annotations of intrinsic protein disorder. The database features three levels of annotation: manually curated, indirect and predicted. Manually curated data is extracted from the DisProt database. Indirect data is inferred from PDB structures that are considered an indication of intrinsic disorder. The 10 predictors currently included (three ESpritz flavors, two IUPred flavors, two DisEMBL flavors, GlobPlot, VSL2b and JRONN) enable MobiDB to provide disorder annotations for every protein in absence of more reliable data. The new version also features a consensus annotation and classification for long disordered regions. In order to complement the disorder annotations, MobiDB features additional annotations from external sources. Annotations from the UniProt database include post-translational modifications and linear motifs. Pfam annotations are displayed in graphical form and are link-enabled, allowing the user to visit the corresponding Pfam page for further information. Experimental proteinprotein interactions from STRING are also classified for disorder content.
After: A database of protein disorder and mobility annotations. MobiDB was designed to offer a centralized resource for annotations of intrinsic protein disorder. The database features three levels of annotation: manually curated, indirect and predicted. Manually curated data is extracted from the DisProt database. Indirect data is inferred from PDB structures that are considered an indication of intrinsic disorder. The 10 predictors currently included (three ESpritz flavors, two IUPred flavors, two DisEMBL flavors, GlobPlot, VSL2b and JRONN) enable MobiDB to provide disorder annotations for every protein in absence of more reliable data. The new version also features a consensus annotation and classification for long disordered regions. In order to complement the disorder annotations, MobiDB features additional annotations from external sources. Annotations from the UniProt database include post-translational modifications and linear motifs. Pfam annotations are displayed in graphical form and are link-enabled, allowing the user to visit the corresponding Pfam page for further information. Experimental proteinprotein interactions are also classified for disorder content.
Edits to 'https://fairsharing.org/FAIRsharing.jwra3e' by 'The FAIRsharing Team' at 09:58, 08 Sep 2016 (approved):
'description' has been modified:
Before: A database of protein disorder and mobility annotations.MobiDB was designed to offer a centralized resource for annotations of intrinsic protein disorder. The database features three levels of annotation: manually curated, indirect and predicted. MobiDB (http://mobidb.bio.unipd.it/) is a database of intrinsically disordered and mobile proteins. Intrinsically disordered regions are key for the function of numerous proteins. Here we provide a new version of MobiDB, a centralized source aimed at providing the most complete picture on different flavors of disorder in protein structures covering all UniProt sequences (currently over 80 million). The database features three levels of annotation: manually curated, indirect and predicted. Manually curated data is extracted from the DisProt database. Indirect data is inferred from PDB structures that are considered an indication of intrinsic disorder. The 10 predictors currently included (three ESpritz flavors, two IUPred flavors, two DisEMBL flavors, GlobPlot, VSL2b and JRONN) enable MobiDB to provide disorder annotations for every protein in absence of more reliable data. The new version also features a consensus annotation and classification for long disordered regions. In order to complement the disorder annotations, MobiDB features additional annotations from external sources. Annotations from the UniProt database include post-translational modifications and linear motifs. Pfam annotations are displayed in graphical form and are link-enabled, allowing the user to visit the corresponding Pfam page for further information. Experimental proteinprotein interactions from STRING are also classified for disorder content.
After: A database of protein disorder and mobility annotations. MobiDB was designed to offer a centralized resource for annotations of intrinsic protein disorder. The database features three levels of annotation: manually curated, indirect and predicted. Manually curated data is extracted from the DisProt database. Indirect data is inferred from PDB structures that are considered an indication of intrinsic disorder. The 10 predictors currently included (three ESpritz flavors, two IUPred flavors, two DisEMBL flavors, GlobPlot, VSL2b and JRONN) enable MobiDB to provide disorder annotations for every protein in absence of more reliable data. The new version also features a consensus annotation and classification for long disordered regions. In order to complement the disorder annotations, MobiDB features additional annotations from external sources. Annotations from the UniProt database include post-translational modifications and linear motifs. Pfam annotations are displayed in graphical form and are link-enabled, allowing the user to visit the corresponding Pfam page for further information. Experimental proteinprotein interactions from STRING are also classified for disorder content.
MobiDB
