databases > DOI:10.25504/FAIRsharing.j45zag

ready H-Invitational Database

Abbreviation:H-InvDB

General Information
H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. By extensive analyses of all human transcripts, we provide curated annotations of human genes and transcripts that include gene structures, alternative splicing variants, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats) , relation with diseases, gene expression profiling, and molecular evolutionary features , protein-protein interactions (PPIs) and gene families/groups.




How to cite this record FAIRsharing.org: H-InvDB; H-Invitational Database; DOI: https://doi.org/10.25504/FAIRsharing.j45zag; Last edited: Feb. 22, 2018, 2:58 p.m.; Last accessed: Sep 25 2018 6:26 a.m.


Record added: June 3, 2015, 1:50 p.m.
Record updated: Dec. 14, 2016, 11:34 p.m. by The FAIRsharing Team.

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Publications

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.

Yamasaki C,Murakami K,Fujii Y,Sato Y,Harada E,Takeda J,Taniya T,Sakate R,Kikugawa S,Shimada M,Tanino M,Koyanagi KO,Barrero RA,Gough C,Chun HW,Habara T,Hanaoka H,Hayakawa Y,Hilton PB,Kaneko Y,Kanno M,Kawahara Y,Kawamura T,Matsuya A,Nagata N,Nishikata K,Noda AO,Nurimoto S,Saichi N,Sakai H,Sanbonmatsu R,Shiba R,Suzuki M,Takabayashi K,Takahashi A,Tamura T,Tanaka M,Tanaka S,Todokoro F,Yamaguchi K,Yamamoto N,Okido T,Mashima J,Hashizume A,Jin L,Lee KB,Lin YC,Nozaki A,Sakai K,Tada M,Miyazaki S,Makino T,Ohyanagi H,Osato N,Tanaka N,Suzuki Y,Ikeo K,Saitou N,Sugawara H,O'Donovan C,Kulikova T,Whitfield E,Halligan B,Shimoyama M,Twigger S,Yura K,Kimura K,Yasuda T,Nishikawa T,Akiyama Y,Motono C,Mukai Y,Nagasaki H,Suwa M,Horton P,Kikuno R,Ohara O,Lancet D,Eveno E,Graudens E,Imbeaud S,Debily MA,Hayashizaki Y,Amid C,Han M,Osanger A,Endo T,Thomas MA,Hirakawa M,Makalowski W,Nakao M,Kim NS,Yoo HS,De Souza SJ,Bonaldo Mde F,Niimura Y,Kuryshev V,Schupp I,Wiemann S,Bellgard M,Shionyu M,Jia L,Thierry-Mieg D,Thierry-Mieg J,Wagner L,Zhang Q,Go M,Minoshima S,Ohtsubo M,Hanada K,Tonellato P,Isogai T,Zhang J,Lenhard B,Kim S,Chen Z,Hinz U,Estreicher A,Nakai K,Makalowska I,Hide W,Tiffin N,Wilming L,Chakraborty R,Soares MB,Chiusano ML,Suzuki Y,Auffray C,Yamaguchi-Kabata Y,Itoh T,Hishiki T,Fukuchi S,Nishikawa K,Sugano S,Nomura N,Tateno Y,Imanishi T,Gojobori T
Nucleic Acids Res 2007

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Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Imanishi T,Itoh T,Suzuki Y,O'Donovan C,Fukuchi S,Koyanagi KO,Barrero RA,Tamura T,Yamaguchi-Kabata Y,Tanino M,Yura K,Miyazaki S,Ikeo K,Homma K,Kasprzyk A,Nishikawa T,Hirakawa M,Thierry-Mieg J,Thierry-Mieg D,Ashurst J,Jia L,Nakao M,Thomas MA,Mulder N,Karavidopoulou Y,Jin L,Kim S,Yasuda T,Lenhard B,Eveno E,Suzuki Y,Yamasaki C,Takeda J,Gough C,Hilton P,Fujii Y,Sakai H,Tanaka S,Amid C,Bellgard M,Bonaldo Mde F,Bono H,Bromberg SK,Brookes AJ,Bruford E,Carninci P,Chelala C,Couillault C,de Souza SJ,Debily MA,Devignes MD,Dubchak I,Endo T,Estreicher A,Eyras E,Fukami-Kobayashi K,Gopinath GR,Graudens E,Hahn Y,Han M,Han ZG,Hanada K,Hanaoka H,Harada E,Hashimoto K,Hinz U,Hirai M,Hishiki T,Hopkinson I,Imbeaud S,Inoko H,Kanapin A,Kaneko Y,Kasukawa T,Kelso J,Kersey P,Kikuno R,Kimura K,Korn B,Kuryshev V,Makalowska I,Makino T,Mano S,Mariage-Samson R,Mashima J,Matsuda H,Mewes HW,Minoshima S,Nagai K,Nagasaki H,Nagata N,Nigam R,Ogasawara O,Ohara O,Ohtsubo M,Okada N,Okido T,Oota S,Ota M,Ota T,Otsuki T,Piatier-Tonneau D,Poustka A,Ren SX,Saitou N,Sakai K,Sakamoto S,Sakate R,Schupp I,Servant F,Sherry S,Shiba R,Shimizu N,Shimoyama M,Simpson AJ,Soares B,Steward C,Suwa M,Suzuki M,Takahashi A,Tamiya G,Tanaka H,Taylor T,Terwilliger JD,Unneberg P,Veeramachaneni V,Watanabe S,Wilming L,Yasuda N,Yoo HS,Stodolsky M,Makalowski W,Go M,Nakai K,Takagi T,Kanehisa M,Sakaki Y,Quackenbush J,Okazaki Y,Hayashizaki Y,Hide W,Chakraborty R,Nishikawa K,Sugawara H,Tateno Y,Chen Z,Oishi M,Tonellato P,Apweiler R,Okubo K,Wagner L,Wiemann S,Strausberg RL,Isogai T,Auffray C,Nomura N,Gojobori T,Sugano S
PLoS Biol 2004

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H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery.

Takeda J,Yamasaki C,Murakami K,Nagai Y,Sera M,Hara Y,Obi N,Habara T,Gojobori T,Imanishi T
Nucleic Acids Res 2012

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