Databases > DOI:10.25504/FAIRsharing.k5a3yt

ready Big Data Nucleic Acid Simulations Database

Abbreviation:BIGNASim

General Information
Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures. BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL database engines: Cassandra to hold trajectory data and MongoDB for analyses and metadata. Most common analyses (helical parameters, NMR observables, sitffness, hydrogen bonding and stacking energies and geometries) are pre-calculated for the trajectories available and shown using the interactive visualization offered by NAFlex interface. Additionaly, whole trajectories, fragments or meta-trajectories can be analysed or downloaded for further in-house processing.

Homepage http://mmb.irbbarcelona.org/BIGNASim

Developed in Spain

Created in 2015

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How to cite this record FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: 10.25504/FAIRsharing.k5a3yt; Last edited: Feb. 22, 2018, 2:59 p.m.; Last accessed: Jun 19 2018 9:30 a.m.


This record is maintained by adamhospital

Record added: Nov. 27, 2015, 10:02 a.m.
Record updated: Dec. 15, 2016, 1:43 p.m. by The FAIRsharing Team.


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BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data

Adam Hospital, Pau Andrio, Cesare Cugnasco, Laia Codo, Yolanda Becerra, Pablo D. Dans, Federica Battistini, Jordi Torres, Ramon Goñí, Modesto Orozco and Josep Lluís Gelpí
Nucleic Acids Research, Database Issue 2015

View Paper (DOI)

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