databases > DOI:10.25504/FAIRsharing.bcjrnq

ready Physiome Model Repository


General Information
The Physiome Model Repository (PMR) is the main online repository for the IUPS Physiome Project, providing version and access controlled repositories, called workspaces, for users to store their data. PMR also provides a mechanism to create persistent access to specific revisions of a workspace, termed exposures. Exposure plugins are available for specific types of data (e.g., CellML or FieldML documents) which enable customizable views of the data when browsing the repository via a web browser, or an application accessing the repository’s content via web services.

How to cite this record PMR; Physiome Model Repository; DOI:; Last edited: Jan. 3, 2020, 3:33 p.m.; Last accessed: Sep 27 2020 3:57 a.m.

This record is maintained by andre  ORCID

Record added: Jan. 22, 2016, 3:31 a.m.
Record updated: Dec. 23, 2019, 9:35 a.m. by The FAIRsharing Team.

Show edit history


Access / Retrieve Data

Conditions of Use

Data Access

REST Web Services


The Physiome Model Repository 2.

Yu T,Lloyd CM,Nickerson DP,Cooling MT,Miller AK,Garny A,Terkildsen JR,Lawson J,Britten RD,Hunter PJ,Nielsen PM
Bioinformatics 2011

View Paper (PubMed) View Publication

Revision history aware repositories of computational models of biological systems.

Miller AK,Yu T,Britten R,Cooling MT,Lawson J,Cowan D,Garny A,Halstead MD,Hunter PJ,Nickerson DP,Nunns G,Wimalaratne SM,Nielsen PM
BMC Bioinformatics 2011

View Paper (PubMed) View Publication

CellML metadata standards, associated tools and repositories.

Beard DA,Britten R,Cooling MT,Garny A,Halstead MD,Hunter PJ,Lawson J,Lloyd CM,Marsh J,Miller A,Nickerson DP,Nielsen PM,Nomura T,Subramanium S,Wimalaratne SM,Yu T
Philos Trans A Math Phys Eng Sci 2009

View Paper (PubMed) View Publication

The CellML Model Repository.

Lloyd CM,Lawson JR,Hunter PJ,Nielsen PF
Bioinformatics 2008

View Paper (PubMed) View Publication

Toward a curated CellML model repository.

Nickerson D,Stevens C,Halstead M,Hunter P,Nielsen P
Conf Proc IEEE Eng Med Biol Soc 2007

View Paper (PubMed) View Publication

The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable.

Nickerson D,Atalag K,de Bono B,Geiger J,Goble C,Hollmann S,Lonien J,Muller W,Regierer B,Stanford NJ,Golebiewski M,Hunter P
Interface Focus 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Identifier Schemas

No identifier schema standards defined


No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.


Record Maintainer