databases > DOI:10.25504/FAIRsharing.va62ke

ready BiGG Models

General Information
BiGG is a freely compendium of published genome-scale metabolic networks, combined into a single database. NCBI genome annotations are used to map genes, and metabolites are linked to many external databases such as KEGG, PubChem as well as others..

Homepage http://bigg.ucsd.edu

Countries that developed this resource United States

Created in 2010

Taxonomic range

Subjects 





How to cite this record FAIRsharing.org: BiGG Models; BiGG Models; DOI: https://doi.org/10.25504/FAIRsharing.va62ke; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Feb 18 2020 1:18 p.m.


This record is maintained by Andreas Dräger  (draeger)  ORCID

Record added: March 17, 2016, 11:24 a.m.
Record updated: Sept. 3, 2016, 6:06 p.m. by The FAIRsharing Team.

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Support

General

schema file https://github.com/SBRG/bigg_models
twitter @ucsd_sbrg

Additional Information

Contact Zachary A. King   ORCID

Tools
Escher http://escher.github.io/ 1.0

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Curation

Manually No link recorded

REST Web Services

http://bigg.ucsd.edu/api/v2/ http://bigg.ucsd.edu/web_api


Publications

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

King ZA,Lu J,Dräger A,Miller P,Federowicz S,Lerman JA,Ebrahim A,Palsson BO,Lewis NE
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

Schellenberger J,Park JO,Conrad TM,Palsson BO
BMC Bioinformatics 2010

View Paper (PubMed) View Publication

Related Standards

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined



Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • 332020 (European Commission)

  • DE-SC0004917 (U.S. Department of Energy)

  • DE-SC0008701 (U.S. Department of Energy)

  • DE-SC0008701 (U.S. Department of Energy)

  • DGE-1144086 (National Science Foundation (NSF), USA)

  • NNF 132150- 002 (Novo Nordisk Foundation, Denmark)

  • R21 HD080682 (U.S. National Library of Medicine)