Edits to 'https://fairsharing.org/FAIRsharing.dnxzmk' by 'The FAIRsharing Team' at 10:46, 18 Dec 2018 (approved):
'organizations' has been modified:
Before:
NIH LINCS Program, USA|http://www.lincsproject.org|Funds
National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
Oregon Health & Science University, USA|http://www.ohsu.edu/xd/education/library/about/departments/ontology-development.cfm|Maintains
After:
Sage Bionetworks|http://sagebionetworks.org/|Maintains
Added:
Sage Bionetworks|http://sagebionetworks.org/|Maintains
Removed:
NIH LINCS Program, USA|http://www.lincsproject.org|Funds
National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
Oregon Health & Science University, USA|http://www.ohsu.edu/xd/education/library/about/departments/ontology-development.cfm|Maintains
'standardsImplemented' has been modified:
Before:
UBER anatomy ONtology
Chemical Entities of Biological Interest
Investigation Study Assay Tabular
Systematized Nomenclature of Medicine-Clinical Terms
Open Microscopy Environment eXtensible Markup Language
NCBI Taxonomy
Medical Subject Headings
After:
Added:
Removed:
UBER anatomy ONtology
Chemical Entities of Biological Interest
Investigation Study Assay Tabular
Systematized Nomenclature of Medicine-Clinical Terms
Open Microscopy Environment eXtensible Markup Language
NCBI Taxonomy
Medical Subject Headings
'accessPoints' has been modified:
Before:
After:
REST|https://repo-prod.prod.sagebase.org/repo/v1|Synapse REST APIs
Added:
REST|https://repo-prod.prod.sagebase.org/repo/v1|Synapse REST APIs
Removed:
'supportLinks' has been modified:
Before:
After:
email|synapseinfo@sagebionetworks.org
help|https://docs.synapse.org/
online documentation|https://docs.synapse.org/articles/governance.html
online documentation|https://docs.synapse.org/articles/accounts_certified_users_and_profile_validation.html
online documentation|https://www.synapse.org/#!StandaloneWiki:ResearchCommunities
online documentation|https://www.synapse.org/#!StandaloneWiki:OpenResearchProjects
Added:
email|synapseinfo@sagebionetworks.org
help|https://docs.synapse.org/
online documentation|https://docs.synapse.org/articles/governance.html
online documentation|https://docs.synapse.org/articles/accounts_certified_users_and_profile_validation.html
online documentation|https://www.synapse.org/#!StandaloneWiki:ResearchCommunities
online documentation|https://www.synapse.org/#!StandaloneWiki:OpenResearchProjects
Removed:
'name' has been modified:
Before: Microenvironment Perturbagen LINCS Center image server
After: Synapse
'licences' has been modified:
Before:
No restrictions||Data
After:
Synapse Apache 2.0|https://github.com/Sage-Bionetworks/Synapse-Repository-Services/blob/develop/LICENSE|Software
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
Added:
Synapse Apache 2.0|https://github.com/Sage-Bionetworks/Synapse-Repository-Services/blob/develop/LICENSE|Software
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
Removed:
No restrictions||Data
'tools' has been modified:
Before:
After:
Synapse R Client||https://sage-bionetworks.github.io/ran/
Synapse Python Client||https://pypi.org/project/synapseclient/
Synapse Command-Line Client||http://docs.synapse.org/python/build/html/CommandLineClient.html
Synapse Java Client||https://github.com/Sage-Bionetworks/Synapse-Repository-Services/blob/develop/client/synapseJavaClient/src/main/java/org/sagebionetworks/client/SynapseClient.java
Added:
Synapse R Client||https://sage-bionetworks.github.io/ran/
Synapse Python Client||https://pypi.org/project/synapseclient/
Synapse Command-Line Client||http://docs.synapse.org/python/build/html/CommandLineClient.html
Synapse Java Client||https://github.com/Sage-Bionetworks/Synapse-Repository-Services/blob/develop/client/synapseJavaClient/src/main/java/org/sagebionetworks/client/SynapseClient.java
Removed:
'yearOfCreation' has been modified:
Before: 2016
After: 2010
'onto_disciplines' has been modified:
Before:
Life Sciences
After:
Biomedical Science
Data Integration and Warehousing
Data Management
Added:
Biomedical Science
Data Integration and Warehousing
Data Management
Removed:
Life Sciences
'onto_domains' has been modified:
Before:
Biological imaging
imaging technique
transcript
After:
Experiment report
data storage
Added:
Experiment report
data storage
Removed:
Biological imaging
imaging technique
transcript
'contact' has been modified:
Before: Damir Sudar
After: Meredith Slota
'contactEmail' has been modified:
Before: sudard@ohsu.edu
After: meredith.slota@sagebionetworks.org
'user_defined_tags' has been modified:
Before:
After:
Data sharing
Added:
Data sharing
Removed:
'grants' has been modified:
Before:
U54 HG008100
After:
Added:
Removed:
U54 HG008100
'publications' has been modified:
Before:
After:
Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas.|Omberg L,Ellrott K,Yuan Y,Kandoth C,Wong C,Kellen MR,Friend SH,Stuart J,Liang H,Margolin AA|Nat Genet|2013
Added:
Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas.|Omberg L,Ellrott K,Yuan Y,Kandoth C,Wong C,Kellen MR,Friend SH,Stuart J,Liang H,Margolin AA|Nat Genet|2013
Removed:
'contactORCID' has been modified:
Before:
After: https://orcid.org/0000-0001-8492-6705
'related_databases' has been modified:
Before:
Ensembl
UniProt Knowledgebase
Library of Integrated Network-Based Cellular Signatures Data Portal
Synapse
After:
Added:
Removed:
Ensembl
UniProt Knowledgebase
Library of Integrated Network-Based Cellular Signatures Data Portal
Synapse
'shortname' has been modified:
Before: MEP LINCS
After: Synapse
'taxonomies' has been modified:
Before:
Homo sapiens
After:
All
Added:
All
Removed:
Homo sapiens
'homepage' has been modified:
Before: https://www.synapse.org/#!Synapse:syn2862345/wiki/72486
After: https://www.synapse.org/
'description' has been modified:
Before: The MEP LINCS project contributes to the development
of the NIH Library of Integrated Network-based Cellular Signatures (LINCS) program by developing a dataset and computational strategy to elucidate how microenvironment (ME) signals affect cell intrinsic
intracellular transcriptional- and protein-defined molecular networks to generate experimentally observable cellular phenotypes measured by high-content imaging.
After: Synapse is a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate. It provides infrastructure and hosting for datasets.
Edits to 'https://fairsharing.org/FAIRsharing.dnxzmk' by 'The FAIRsharing Team' at 12:06, 10 Jan 2018 (approved):
'name' has been modified:
Before: Microenvironment Perturbagen (MEP) LINCS Center image server
After: Microenvironment Perturbagen LINCS Center image server