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GrainGenes, a Database for Triticeae and Avena

Abbreviation:GrainGenes

General Information

The GrainGenes website hosts a wealth of information for researchers working on Triticeae species, oat and their wild relatives. The website hosts a database encompassing information such as genetic maps, genes, alleles, genetic markers, phenotypic data, quantitative trait loci studies, experimental protocols and publications. The database can be queried by text searches, browsing, Boolean queries, MySQL commands, or by using pre-made queries created by the curators. GrainGenes is not solely a database, but serves as an informative site for researchers and a means to communicate project aims, outcomes and a forum for discussion.

Homepage http://wheat.pw.usda.gov

Countries that developed this resource United States

Created in 1992

Taxonomic range

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: GrainGenes; GrainGenes, a Database for Triticeae and Avena; DOI: https://doi.org/10.25504/FAIRsharing.pcs58g; Last edited: May 20, 2021, 1:50 p.m.; Last accessed: Sep 20 2021 10:16 p.m.

This record is maintained by GrainGenes

Record added: Oct. 21, 2016, 6:32 p.m.
Record updated: May 11, 2021, 1:45 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.pcs58g' by 'The FAIRsharing Team' at 13:45, 11 May 2021 (approved):

	'supportLinks' has been modified:
		Before:
			help|http://wheat.pw.usda.gov/GG3/feedback/
			mailing list|http://graingenes.org/grains.welcome.html
			online documentation|http://wheat.pw.usda.gov/GG3/db-info
			schema file|http://wheat.pw.usda.gov/cgi-bin/GG3/sql.cgi
		After:
			help|http://wheat.pw.usda.gov/GG3/feedback/
			mailing list|http://graingenes.org/grains.welcome.html
			online documentation|http://wheat.pw.usda.gov/GG3/db-info
		Added:
		Removed:
			schema file|http://wheat.pw.usda.gov/cgi-bin/GG3/sql.cgi

	'dataProcesses' has been modified:
		Before:
			Quick Queries, data access, http://wheat.pw.usda.gov/GG3/quickquery
			Database Browser, data access, http://wheat.pw.usda.gov/cgi-bin/GG3/browse.cgi
			Advanced Queries, data access, http://wheat.pw.usda.gov/GG3/quickquery
		After:
			Quick Queries, data access, http://wheat.pw.usda.gov/GG3/quickquery
			Database Browser, data access, http://wheat.pw.usda.gov/cgi-bin/GG3/browse.cgi
			Advanced Queries, data access, http://wheat.pw.usda.gov/GG3/quickquery
			Download Specification, data release, http://wheat.pw.usda.gov/cgi-bin/GG3/sql.cgi
		Added:
			Download Specification, data release, http://wheat.pw.usda.gov/cgi-bin/GG3/sql.cgi
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.pcs58g' by 'The FAIRsharing Team' at 14:25, 16 Apr 2021 (approved):

	'organizations' has been modified:
		Before:
			United States Department of Agriculture, Agricultural Research Service (USDA-ARS)|http://www.ars.usda.gov|Undefined
		After:
			United States Department of Agriculture, Agricultural Research Service (USDA-ARS)|http://www.ars.usda.gov|Funds
		Added:
			United States Department of Agriculture, Agricultural Research Service (USDA-ARS)|http://www.ars.usda.gov|Funds
		Removed:
			United States Department of Agriculture, Agricultural Research Service (USDA-ARS)|http://www.ars.usda.gov|Undefined

Edits to 'https://fairsharing.org/FAIRsharing.pcs58g' by 'The FAIRsharing Team' at 17:46, 16 Mar 2021 (approved):

	'miriam_id' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.pcs58g' by 'The FAIRsharing Team' at 11:47, 21 Nov 2018 (approved):

	'domains' has been modified:
		Before:
			Allele
			Deoxyribonucleic acid (DNA)
			Genetic map
			Genome map
			Genomics
			Life Science
			Phenomics
			Physical map
			Protocol
			Publication
			Quantitative trait loci (QTL)
		After:
			Allele
			Deoxyribonucleic acid (DNA)
			Genetic map
			Genetic polymorphism
			Genome map
			Genomics
			Life Science
			Phenomics
			Physical map
			Protocol
			Publication
			Quantitative trait loci (QTL)
		Added:
			Genetic polymorphism
		Removed:

	'description' has been modified:
		Before: The GrainGenes website hosts a wealth of information for researchers working on Triticeae species, oat and their wild relatives. The website hosts a database encompassing information such as genetic maps, genes, alleles, genetic markers, phenotypic data, quantitative trait loci studies, experimental protocols and publications. The database can be queried by text searches, browsing, Boolean queries, MySQL commands, or by using pre-made queries created by the curators. GrainGenes is not solely a database, but serves as an informative site for researchers and a means to communicate project aims, outcomes and a forum for discussion. 
		After: The GrainGenes website hosts a wealth of information for researchers working on Triticeae species, oat and their wild relatives. The website hosts a database encompassing information such as genetic maps, genes, alleles, genetic markers, phenotypic data, quantitative trait loci studies, experimental protocols and publications. The database can be queried by text searches, browsing, Boolean queries, MySQL commands, or by using pre-made queries created by the curators. GrainGenes is not solely a database, but serves as an informative site for researchers and a means to communicate project aims, outcomes and a forum for discussion.

Edits to 'https://fairsharing.org/FAIRsharing.pcs58g' by 'graingenes' at 19:59, 03 May 2017 (approved):

	'shortname' has been modified:
		Before: GG3
		After: GrainGenes

Edits to 'https://fairsharing.org/FAIRsharing.pcs58g' by 'graingenes' at 21:23, 01 Nov 2016 (approved):

	'contactName' has been modified:
		Before:
			GrainGenes Curators
		After:
			GrainGenes Feedback
			Taxonomy list has changed: 
			Previous values:
			Aegilops tauschii|
			Avena|
			Hordeum|http://identifiers.org/taxonomy/4512
			Hordeum vulgare|http://identifiers.org/taxonomy/4513
			Saccharum|
			Saccharum officinarum|http://identifiers.org/taxonomy/4547
			Triticeae|
			Triticum|http://identifiers.org/taxonomy/4564
			Triticum aestivum|http://identifiers.org/taxonomy/4565?resource=MIR:00100019
			Triticum monococcum|
			New values: 
			Aegilops tauschii|
			Avena|
			Hordeum|http://identifiers.org/taxonomy/4512
			Hordeum vulgare|http://identifiers.org/taxonomy/4513
			Triticeae|
			Triticum|http://identifiers.org/taxonomy/4564
			Triticum aestivum|http://identifiers.org/taxonomy/4565?resource=MIR:00100019
			Triticum monococcum|
			Secale|
		Added:
		Removed:

In Collections

AgBioData

Wheat Data Interoperability Guidelines

Support

General

help	http://wheat.pw.usda.gov/GG3/feedback/
Mailing List	None
online documentation	http://wheat.pw.usda.gov/GG3/db-info

Additional Information

Contact

GrainGenes Feedback

Tools

GSP: Genome Specific Primers	http://probes.pw.usda.gov/GSP/
BLAST	http://wheat.pw.usda.gov/GG3/blast	2.2.23
CMap	http://wheat.pw.usda.gov/cmap/	1.01
JBrowse Genome Browser	http://wheat.pw.usda.gov/GG3/genome_browser	1.69

Access / Retrieve Data

Conditions of Use

Data Release

Download Specification

http://wheat.pw.usda.gov/cgi-bin/GG3/sql.cgi

Data Access

Quick Queries	http://wheat.pw.usda.gov/GG3/quickquery
Database Browser	http://wheat.pw.usda.gov/cgi-bin/GG3/browse.cgi
Advanced Queries	http://wheat.pw.usda.gov/GG3/quickquery

Publications

GrainGenes: a Genomic Database for Triticeae and Avena

Helen O'Sullivan
Plant Bioinformatics 2007

View Publication

GrainGenes 2.0. An Improved Resource for the Small-Grains Community

Victoria Carollo, David E. Matthews, Gerard R. Lazo, Thomas K. Blake, David D. Hummel, Nancy Lui, David L. Hane, and Olin D. Anderson
Plant Physiology 2005

View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

NCBI Taxonomy

Models and Formats

FASTA Sequence Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by GrainGenes

Funds

United States Department of Agriculture, Agricultural Research Service (USDA-ARS) (Government body)

GrainGenes, a Database for Triticeae and Avena

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