LinkProt: A database of proteins with topological links

Abbreviation:LinkProt

General Information

LinkProt collects information about protein chains and complexes that form links. LinkProt detects deterministic links (with loops closed by cysteine), and determines likelihood of formation of links in networks of protein chains called MacroLinks. Links are presented graphically in an intuitive way, using tools that involves surfaces of minimal area spanned on closed loops. The database presents extensive information about biological functions of proteins with links and enables users to analyze new structures.

Homepage http://linkprot.cent.uw.edu.pl/

Countries that developed this resource Poland

Created in 2016

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Apr 18 2021 5:43 p.m.

This record is maintained by dzarmola

Record added: Oct. 31, 2016, 3:25 p.m.
Record updated: Dec. 24, 2019, 11:24 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.tw6ecm' by 'The FAIRsharing Team' at 11:24, 24 Dec 2019 (approved):

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In Collections

RDA Covid-19 WG Resources

Support

General

help	http://linkprot.cent.uw.edu.pl/interpret ...
help	http://linkprot.cent.uw.edu.pl/apply_res ...
help	http://linkprot.cent.uw.edu.pl/tutorial_ ...
help	http://linkprot.cent.uw.edu.pl/tutorial_ ...
online documentation	http://linkprot.cent.uw.edu.pl/statistic ...
online documentation	http://linkprot.cent.uw.edu.pl/link_dete ...
online documentation	http://linkprot.cent.uw.edu.pl/link_clas ...
online documentation	http://linkprot.cent.uw.edu.pl/about

Additional Information

Contact

Aleksandra Jarmolińska ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Data Curation

submit structure

http://linkprot.cent.uw.edu.pl/submit

Data Access

search	http://linkprot.cent.uw.edu.pl/search/
browse	http://linkprot.cent.uw.edu.pl/browse/

Publications

LinkProt: a database collecting information about biological links

Pawel Dabrowski-Tumanski; Aleksandra I. Jarmolinska; Wanda Niemyska; Eric J. Rawdon; Kenneth C. Millett; Joanna I. Sulkowska
Nucleic Acid Research 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Protein Data Bank Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

KnotProt: A database of proteins with knots and slipknots

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by dzarmola

Maintains

Interdisciplinary Laboratory of Biological Systems Modelling, Center of New Technology (CeNT), Warsaw, Poland (Lab)

LinkProt: A database of proteins with topological links

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