Genome Sequence Archive

Abbreviation:GSA

Recommended

General Information

GSA is a data repository specialized for archiving raw sequence reads. It supports data generated from a variety of sequencing platforms ranging from Sanger sequencing machines to single-cell sequencing machines and provides data storing and sharing services free of charge for worldwide scientific communities. In addition to raw sequencing data, GSA also accommodates secondary analyzed files in acceptable formats (like BAM, VCF). Its user-friendly web interfaces simplify data entry and submitted data are roughly organized as two parts, viz., Metadata and File, where the former can be further assorted into BioProject, BioSample, Experiment and Run, and the latter contains raw sequence reads.

Homepage https://bigd.big.ac.cn/gsa/

Countries that developed this resource China

Created in 2015

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: GSA; Genome Sequence Archive; DOI: https://doi.org/10.25504/FAIRsharing.tdhkc6; Last edited: March 10, 2020, 2:33 p.m.; Last accessed: Jan 18 2021 10:38 p.m.

Publication for citation GSA: Genome Sequence Archive Wang Y,Song F,Zhu J,Zhang S,Yang Y,Chen T,Tang B,Dong L,Ding N,Zhang Q,Bai Z,Dong X,Chen H,Sun M,Zhai S,Sun Y,Yu L,Lan L,Xiao J,Fang X,Lei H,Zhang Z,Zhao W; Genomics Proteomics Bioinformatics ; 2017; 10.1016/j.gpb.2017.01.001;

This record is maintained by gsa

Record added: April 7, 2017, 2:29 a.m.
Record updated: March 10, 2020, 2:27 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.tdhkc6' by 'The FAIRsharing Team' at 14:27, 10 Mar 2020 (approved):

	'contact' has been modified:
		Before: gsa
		After: GSA General Contact

Edits to 'https://fairsharing.org/FAIRsharing.tdhkc6' by 'The FAIRsharing Team' at 14:26, 10 Mar 2020 (approved):

	'organizations' has been modified:
		Before:
			863 Program, National High Technology Research and Development Program of China|http://www.most.gov.cn/eng/programmes1/|Funds
			Chinese Academy of Sciences (CAS), China|http://www.cas.cn/|Funds
		After:
			863 Program, National High Technology Research and Development Program of China|http://www.most.gov.cn/eng/programmes1/|Funds
			Chinese Academy of Sciences (CAS), China|http://www.cas.cn/|Funds
			Big Data Center, Beijing Institute of Genomics (BIGD), China|http://bigd.big.ac.cn/|Maintains
		Added:
			Big Data Center, Beijing Institute of Genomics (BIGD), China|http://bigd.big.ac.cn/|Maintains
		Removed:

	'supportLinks' has been modified:
		Before:
			FAQ|http://gsa.big.ac.cn/document/start_here.jsp#faq
			contact form|http://gsa.big.ac.cn/document/start_here.jsp#contact
			help|http://gsa.big.ac.cn/document/start_here.jsp
		After:
			help|https://bigd.big.ac.cn/gsa/document/Handbook-GSA_2.1.us.pdf
			online documentation|https://bigd.big.ac.cn/gsa/statistics
		Added:
			help|https://bigd.big.ac.cn/gsa/document/Handbook-GSA_2.1.us.pdf
			online documentation|https://bigd.big.ac.cn/gsa/statistics
		Removed:
			FAQ|http://gsa.big.ac.cn/document/start_here.jsp#faq
			contact form|http://gsa.big.ac.cn/document/start_here.jsp#contact
			help|http://gsa.big.ac.cn/document/start_here.jsp

	'licences' has been modified:
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			Creative Commons Attribution 3.0 China Mainland  (CC BY 3.0 CN)|https://creativecommons.org/licenses/by/3.0/cn/|Data
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			Creative Commons Attribution 3.0 China Mainland  (CC BY 3.0 CN)|https://creativecommons.org/licenses/by/3.0/cn/|Data
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	'tools' has been modified:
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			Submit||http://gsa.big.ac.cn/submit/project/general!newProject.action
			Search||http://gsa.big.ac.cn/
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			Submit||http://gsa.big.ac.cn/submit/project/general!newProject.action
			Search||http://gsa.big.ac.cn/

	'onto_disciplines' has been modified:
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			Genomics
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			Genomics
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	'onto_domains' has been modified:
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			Sequence
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			Nucleic acid sequence
			read
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			Nucleic acid sequence
			read
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			Sequence

	'dataProcesses' has been modified:
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			Search
			Submit
			Download
			Browse
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			Search
			Submit
			Download
			Browse
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	'miriam_id' has been modified:
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	'publications' has been modified:
		Before:
			The BIG Data Center: from deposition to integration to translation.|BIG Data Center Members|Nucleic Acids Res|2016
			GSA: Genome Sequence Archive|Yanqing Wang|Genomics, Proteomics & Bioinformatics|2017
		After:
			The BIG Data Center: from deposition to integration to translation.|BIG Data Center Members|Nucleic Acids Res|2016
			GSA: Genome Sequence Archive|Wang Y,Song F,Zhu J,Zhang S,Yang Y,Chen T,Tang B,Dong L,Ding N,Zhang Q,Bai Z,Dong X,Chen H,Sun M,Zhai S,Sun Y,Yu L,Lan L,Xiao J,Fang X,Lei H,Zhang Z,Zhao W|Genomics Proteomics Bioinformatics|2017
		Added:
			GSA: Genome Sequence Archive|Wang Y,Song F,Zhu J,Zhang S,Yang Y,Chen T,Tang B,Dong L,Ding N,Zhang Q,Bai Z,Dong X,Chen H,Sun M,Zhai S,Sun Y,Yu L,Lan L,Xiao J,Fang X,Lei H,Zhang Z,Zhao W|Genomics Proteomics Bioinformatics|2017
		Removed:
			GSA: Genome Sequence Archive|Yanqing Wang|Genomics, Proteomics & Bioinformatics|2017

	'homepage' has been modified:
		Before: http://gsa.big.ac.cn
		After: https://bigd.big.ac.cn/gsa/

In Collections

RDA Covid-19 WG Resources

Support

General

help	Handbook
online documentation	Statistics

Additional Information

Contact

GSA General Contact

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 3.0 China Mainland (CC BY 3.0 CN)

Data Release

Download

ftp://download.big.ac.cn/gsa/

Data Curation

Submit

http://bigd.big.ac.cn/gsub/submit/gsa/list

Data Access

Search	http://bigd.big.ac.cn/search?dbId=gsa
Browse	https://bigd.big.ac.cn/gsa/browse

Publications

The BIG Data Center: from deposition to integration to translation.

BIG Data Center Members
Nucleic Acids Res 2016

View Paper (PubMed) View Publication

GSA: Genome Sequence Archive

Wang Y,Song F,Zhu J,Zhang S,Yang Y,Chen T,Tang B,Dong L,Ding N,Zhang Q,Bai Z,Dong X,Chen H,Sun M,Zhai S,Sun Y,Yu L,Lan L,Xiao J,Fang X,Lei H,Zhang Z,Zhao W
Genomics Proteomics Bioinformatics 2017

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Minimal Information about a high throughput SEQuencing Experiment

Terminology Artifacts

No semantic standards defined

Models and Formats

FASTQ Sequence and Sequence Quality Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Elsevier's Data Policy

Credit

Record Maintainer

This record is maintained by gsa

Funds

863 Program, National High Technology Research and Development Program of China (Government body)
Chinese Academy of Sciences (CAS), China (Research institute)

Maintains

National Genomics Data Center (BIG Data Center), Beijing Institute of Genomics, Chinese Academy of Sciences, Bejing, China (Research institute) Lead

Grant Number(s)

2014AA021503 and 2015AA020108 (863 Program, National High Technology Research and Development Program of China)
XDA08020102 (Chinese Academy of Sciences (CAS), China)
XDB13040500 (Chinese Academy of Sciences (CAS), China)

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