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The Triticeae Toolbox

Abbreviation:T3

General Information

The Triticeae Toolbox (T3) is a repository for public wheat data generated by the Wheat Coordinated Agricultural Project (Wheat CAP). Funding is provided by the National Institute for Food and Agriculture (NIFA) and the United States Department of Agriculture (USDA). The current project is funded through NIFA's International Wheat Yield Partnership (IWYP) and part of the Agriculture and Food Research Initiative (AFRI).

Homepage https://triticeaetoolbox.org/

Countries that developed this resource United States

Created in 2006

Taxonomic range

Avena

Hordeum vulgare

Triticum aestivum

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: T3; The Triticeae Toolbox; DOI: https://doi.org/10.25504/FAIRsharing.55ev2y; Last edited: Jan. 7, 2020, 4:39 p.m.; Last accessed: Apr 08 2020 7:10 a.m.

This record is maintained by claybirkett

Record added: May 3, 2017, 5:58 p.m.
Record updated: Jan. 7, 2020, 4:38 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.55ev2y' by 'The FAIRsharing Team' at 16:38, 07 Jan 2020 (approved):

	'contactEmail' has been modified:
		Before: JeanLuc.Jannink@ars.usda.gov
		After: tht_curator@graingenes.org

	'contact' has been modified:
		Before: Jean-Luc Jannink
		After:

Edits to 'https://fairsharing.org/FAIRsharing.55ev2y' by 'The FAIRsharing Team' at 15:18, 06 Jan 2020 (approved):

	'organizations' has been modified:
		Before:
			United States Department of Agriculture, Agricultural Research Service (USDA-ARS)|http://www.ars.usda.gov|Undefined
		After:
			United States Department of Agriculture, Agricultural Research Service (USDA-ARS)|http://www.ars.usda.gov|Funds
		Added:
			United States Department of Agriculture, Agricultural Research Service (USDA-ARS)|http://www.ars.usda.gov|Funds
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			United States Department of Agriculture, Agricultural Research Service (USDA-ARS)|http://www.ars.usda.gov|Undefined

	'supportLinks' has been modified:
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			contact form|https://triticeaetoolbox.org/feedback.php
			email|tht_curator@graingenes.org
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			contact form|https://triticeaetoolbox.org/feedback.php
			email|tht_curator@graingenes.org
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	'name' has been modified:
		Before: The Triticeae Toolbox 
		After: The Triticeae Toolbox

	'onto_disciplines' has been modified:
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			Genomics
			Phenomics
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			Genomics
			Phenomics
			Proteomics
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			Proteomics
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	'onto_domains' has been modified:
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			Gene report
			SNP
			genotype
			phenotype
			protein
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			Gene report
			SNP
			genotype
			phenotype
			protein
		Removed:

	'contactEmail' has been modified:
		Before: tht_curator@graingenes.org
		After: JeanLuc.Jannink@ars.usda.gov

	'contact' has been modified:
		Before: 
		After: Jean-Luc Jannink

	'miriam_id' has been modified:
		Before: None
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	'dataProcesses' has been modified:
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			JBrowse
			Search
			Download
			Browse
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			JBrowse
			Search
			Download
			Browse
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	'tools' has been modified:
		Before:
			Cluster||https://triticeaetoolbox.org/wheat/cluster_lines.php
			Genomic Association and Prediction||https://triticeaetoolbox.org/wheat/gensel.php
			JBrowse||https://triticeaetoolbox.org/jbrowse/
		After:
			Cluster||https://triticeaetoolbox.org/wheat/analyze/cluster_lines.php
			Genomic Association and Prediction||https://triticeaetoolbox.org/wheat/gensel.php
		Added:
			Cluster||https://triticeaetoolbox.org/wheat/analyze/cluster_lines.php
		Removed:
			Cluster||https://triticeaetoolbox.org/wheat/cluster_lines.php
			JBrowse||https://triticeaetoolbox.org/jbrowse/

	'contactORCID' has been modified:
		Before: 
		After: 0000-0003-4849-628X

In Collections

AgBioData

Wheat Data Interoperability Guidelines

Support

General

contact form	https://triticeaetoolbox.org/feedback.ph ...
support email	tht_curator@graingenes.org

Additional Information

Contact

tht_curator@graingenes.org ORCID

Tools

Cluster	https://triticeaetoolbox.org/wheat/analyze/cluster_lines.php
Genomic Association and Prediction	https://triticeaetoolbox.org/wheat/gensel.php

Access / Retrieve Data

Conditions of Use

Applies to: Data use

2009 Toronto Statement on Benefits and Best Practices of Rapid Pre-Publication Data Release

Applies to: Database software

Triticase Toolbox License

Data Access

JBrowse	https://triticeaetoolbox.org/jbrowse/
Search	No link recorded
Download	No link recorded
Browse	No link recorded

REST Web Services

https://github.com/plantbreeding/API

https://triticeaetoolbox.org/wheat/brapi/v1/

Publications

The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding

Blake VC, Birkett C, Matthews DE, Hane DL, Bradbury P, Jannink JL.
Plant Genome 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by claybirkett

Funds

United States Department of Agriculture, Agricultural Research Service (USDA-ARS) (Government body)

The Triticeae Toolbox

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