FAIRsharing: biodbcore-001016: NDEx

The Network Data Exchange (NDEx)

Abbreviation:NDEx

Recommended

General Information

NDEx is an online commons where scientists can upload, share, and publicly distribute biological networks and pathway models. The NDEx Project maintains a web-accessible public server, a documentation website, provides seamless connectivity to Cytoscape as well as programmatic access using a variety of languages including Python and Java. NDEx users can easily create accounts or sign in using their Google credentials thanks to the supported open authentication (OAUTH2) method and mint DOIs for their networks to use in publications or include in other resources for long term access.

Homepage http://www.ndexbio.org

Developed in United States

Created in 2013

Taxonomic range

All

Scope and data types

Cancer

Genetic interaction

Molecular interaction

Network model

Pathway model

In the following recommendations:

How to cite this record FAIRsharing.org: NDEx; The Network Data Exchange (NDEx); DOI: 10.25504/FAIRsharing.8nq9t6; Last edited: Feb. 22, 2018, 3:06 p.m.; Last accessed: Jun 19 2018 9:11 a.m.

This record is maintained by @NDExProject

Record added: Nov. 28, 2017, 9:57 p.m.
Record updated: Jan. 11, 2018, 12:45 p.m. by The FAIRsharing Team.

Support

General

blog	Informational Website
contact form	Contact Us
help	Report a Bug
online documentation	User manuals & Technical docs
twitter	Twitter Feed

Additional Information

Contact

Rudolf T. Pillich, PhD

Tools

CyNDEx - The NDEx Cytoscape App

http://apps.cytoscape.org/apps/cyndex

4.0.1

Access / Retrieve Data

Conditions of Use

Applies to: Database software

BSD-3-Clause License (Modified BSD License) (New BSD License)

Publications

NDEx: A Community Resource for Sharing and Publishing of Biological Networks.

Pillich RT,Chen J,Rynkov V,Welker D,Pratt D
Methods Mol Biol 2017

View Paper (PubMed) View Paper (DOI)

NDEx, the Network Data Exchange.

Pratt D,Chen J,Welker D,Rivas R,Pillich R,Rynkov V,Ono K,Miello C,Hicks L,Szalma S,Stojmirovic A,Dobrin R,Braxenthaler M,Kuentzer J,Demchak B,Ideker T
Cell Syst 2015

View Paper (PubMed) View Paper (DOI)

NDEx 2.0: A Clearinghouse for Research on Cancer Pathways.

Pratt D,Chen J,Pillich R,Rynkov V,Gary A,Demchak B,Ideker T
Cancer Res 2017

View Paper (PubMed) View Paper (DOI)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts