TreeGenes

General Information

TreeGenes is focused on connecting genomic, phenotypic, and environmental data for forest tree populations across the world. The database provides a custom informatics tools to manage the flood of information resulting from high-throughput genomics projects in forest trees from sample collection to downstream analysis. This resource is enhanced with systems that are well connected with federated databases, automated data flows, machine learning analysis, standardized annotations and quality control processes. The TreeGenes database contains several curated modules that support the storage of data and provide the foundation for web-based searches and visualization tools.

Homepage https://treegenesdb.org/

Countries that developed this resource United States

Taxonomic range

Knowledge Domains

Subjects

Awaiting DOI assignment.

This record is maintained by jwegrzyn ORCID

Record added: March 15, 2018, 1:31 p.m.
Record updated: June 26, 2018, 1:26 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/bsg-d001077' by 'The FAIRsharing Team' at 13:27, 26 Jun 2018 (approved):

	'deprecation_reason' has been modified:
		Before: None
		After: None

Edits to 'https://fairsharing.org/bsg-d001077' by 'The FAIRsharing Team' at 14:02, 15 Mar 2018 (approved):

	'description' has been modified:
		Before: The TreeGenes database and Dendrome project provide custom informatics tools to manage the flood of information resulting from high-throughput genomics projects in forest trees from sample collection to downstream analysis. The TreeGenes database contains several curated modules that support the storage of data and provide the foundation for web-based searches and visualization tools.
		After: TreeGenes is focused on connecting genomic, phenotypic, and environmental data for forest tree populations across the world. The database provides a custom informatics tools to manage the flood of information resulting from high-throughput genomics projects in forest trees from sample collection to downstream analysis. This resource is enhanced with systems that are well connected with federated databases, automated data flows, machine learning analysis, standardized annotations and quality control processes. The TreeGenes database contains several curated modules that support the storage of data and provide the foundation for web-based searches and visualization tools.

In Collections

AgBioData

Support

General

twitter

@TreeGenes

Additional Information

Contact

TreeGenes Helpdesk

Tools

DiversiTree	https://treegenesdb.org/DiversiTree
CartograTree	https://treegenesdb.org/cartogratree
JBrowse	https://treegenesdb.org/Drupal/jbrowse

Access / Retrieve Data

Conditions of Use

Data Curation

Data Submission

https://treegenesdb.org/Drupal/node/2665

Data Access

Browse Species	https://treegenesdb.org/Drupal/species_directory/main
Similarity Searches	https://treegenesdb.org/Drupal/Diamond/submit
Download Data	https://treegenesdb.org/FTP/

Publications

TreeGenes: A forest tree genome database.

Wegrzyn JL,Lee JM,Tearse BR,Neale DB
Int J Plant Genomics 2008

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by jwegrzyn ORCID

Funds

United States Department of Agriculture (USDA), USA (Government body)
National Science Foundation (NSF), USA (Government body)

Maintains

Plant Computational Genomics Lab, University of Conneticut, USA (Lab)

Grant Number(s)

2016-67013-24469 (United States Department of Agriculture (USDA), USA)
NSF 1443040 (National Science Foundation (NSF), USA)
NSF 1444573 (National Science Foundation (NSF), USA)

TreeGenes

We need your help!

Developed by

Contact Us

About FAIRsharing