databases > DOI:10.25504/FAIRsharing.97kZl6

ready SalmoBase

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SalmoBase is an integrated molecular resource for Salmonid species which includes visualizations and analytic tools. The genome of the Atlantic salmon (Salmo salar) has undergone extensive restructuring since a whole genome duplication event ~80 million years ago, which creates opportunities to explore the evolutionary process of rediploidization. A public genome assembly is available and ordered into 29 chromosome files. SalmoBase includes a GBrowse interface for exploring the chromosome sequence as well as BLAST functionality and links to expression levels, gene and SNP information. Using public RNAseq data 37,000 high confidence protein coding genes have been identified, wherein almost half show splice variants.




How to cite this record FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Nov. 23, 2018, 11:27 a.m.; Last accessed: Dec 14 2018 8:39 a.m.


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Record added: May 14, 2018, 1:39 p.m.
Record updated: May 16, 2018, 10:40 a.m. by The FAIRsharing Team.

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SalmoBase: an integrated molecular data resource for Salmonid species.

Samy JKA,Mulugeta TD,Nome T,Sandve SR,Grammes F,Kent MP,Lien S,Vage DI
BMC Genomics 2017

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