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ready GenomeHubs

General Information
GenomeHubs provide a containerized environment to facilitate the setup and hosting of custom Ensembl genome browsers. This simplifies mirroring of existing content and import of new genomic data into the Ensembl database schema. GenomeHubs also provide a set of analysis containers to decorate imported genomes with results of standard analyses and functional annotations and support export to flat files, including EMBL format for submission of assemblies and annotations to International Nucleotide Sequence Database Collaboration.




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Record added: July 31, 2018, 11:11 a.m.
Record updated: July 31, 2018, 11:14 a.m. by The FAIRsharing Team.

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Publications

GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species.

Challis RJ,Kumar S,Stevens L,Blaxter M
Database (Oxford) 2017

View Paper (PubMed) View Publication

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Grant Number(s)

  • BB/K019945/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/K020129/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BB/K020161/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)