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Gene Transcription Regulation Database

Abbreviation:GTRD

General Information

Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

Homepage http://gtrd.biouml.org/

Developed in Russia

Created in 2016

Taxonomic range

Homo sapiens

Mus musculus

Scope and data types

Binding site

Chromatin immunoprecipitation - DNA sequencing (ChIP-seq)

Gene

Life Science

Transcript

Transcription factor (TF)

Transcription factor (TF) binding site prediction

Awaiting DOI assignment.

Record added: July 31, 2018, 3:11 p.m.
Record updated: Aug. 29, 2018, 4:42 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/bsg-d001116' by 'The FAIRsharing Team' at 16:42, 29 Aug 2018 (not approved):

	'contactORCID' has been modified:
		Before: https://orcid.org/0000-0002-0396-0256
		After: 0000-0002-0396-0256

Edits to 'https://fairsharing.org/bsg-d001116' by 'The FAIRsharing Team' at 15:44, 31 Jul 2018 (not approved):

	'licences' has been modified:
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			Freely use for non-commercial purposes|https://gtrd16-07.biouml.org/|Data
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			Freely use for non-commercial purposes|http://gtrd.biouml.org/|Data
		Added:
			Freely use for non-commercial purposes|http://gtrd.biouml.org/|Data
		Removed:
			Freely use for non-commercial purposes|https://gtrd16-07.biouml.org/|Data

	'contactEmail' has been modified:
		Before: ivan@dote.ru
		After: fedor@biouml.org

	'contact' has been modified:
		Before: Ivan Yevshin
		After: Fedor Kolpakov

	'supportLinks' has been modified:
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			help|https://gtrd16-07.biouml.org/
			online documentation|http://wiki.biouml.org/index.php/GTRD
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			help|http://gtrd.biouml.org/
			online documentation|http://wiki.biouml.org/index.php/GTRD
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			help|http://gtrd.biouml.org/
		Removed:
			help|https://gtrd16-07.biouml.org/

	'contactORCID' has been modified:
		Before: 
		After: https://orcid.org/0000-0002-0396-0256

Support

General

help	http://gtrd.biouml.org/
online documentation	http://wiki.biouml.org/index.php/GTRD

Additional Information

Contact

Fedor Kolpakov ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Freely use for non-commercial purposes

Data Versioning

V18.01

http://gtrd.biouml.org/

Data Access

browse	https://gtrd16-07.biouml.org/bioumlweb/#anonymous=true&perspective=GTR ...
download	https://gtrd16-07.biouml.org/downloads/current/

Publications

GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments.

Yevshin I,Sharipov R,Valeev T,Kel A,Kolpakov F
Nucleic Acids Res 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Related Databases

Ensembl

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Skolkovo Foundation, Moscow, Russia (Charitable foundation)
Research and development on priority directions of science and technology in Russia, 2014–2020 (Government body)

Grant Number(s)

RFMEFI60414X0101 (Research and development on priority directions of science and technology in Russia, 2014–2020)

Gene Transcription Regulation Database

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