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Bovine Genome Database

Abbreviation:BGD

General Information

The Bovine Genome Database project is developed to support the efforts of bovine genomics researchers by providing data mining, genome navigation and annotation tools for the bovine reference genome based on the hereford cow, L1 Dominette 01449.

Homepage http://bovinegenome.org/

Countries that developed this resource United States

Created in 2009

Taxonomic range

Bos taurus

Knowledge Domains

Subjects

Awaiting DOI assignment.

Record added: Aug. 1, 2018, 6:57 p.m.
Record updated: Jan. 16, 2020, 3:02 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/bsg-d001122' by 'The FAIRsharing Team' at 15:02, 16 Jan 2020 (approved):

	'grants' has been modified:
		Before:
			2007-35616-17882
			2010-65205-20407
			613689
		After:
			2007-35616-17882
			2010-65205-20407
			2010-65205-20647
			613689
		Added:
			2010-65205-20647
		Removed:

	'tools' has been modified:
		Before:
			BovineMine|v1.4|http://bovinegenome.org/bovinemine/begin.do
			Chromosomes and Scaffold ID Lookup||http://www.bovinegenome.org/?q=chromosome_id_lookup
			Annotation Assembly Comparison||http://www.bovinegenome.org/?q=annotation_assembly_comparison
			Ensembl-NCBI Database Cross References||http://bovinegenome.org/?q=node/65
			Gene expression||http://bovinegenome.org/?q=node/64
		After:
			BovineMine|v1.6|http://128.206.116.13:8080/bovinemine/begin.do
		Added:
			BovineMine|v1.6|http://128.206.116.13:8080/bovinemine/begin.do
		Removed:
			BovineMine|v1.4|http://bovinegenome.org/bovinemine/begin.do
			Chromosomes and Scaffold ID Lookup||http://www.bovinegenome.org/?q=chromosome_id_lookup
			Annotation Assembly Comparison||http://www.bovinegenome.org/?q=annotation_assembly_comparison
			Ensembl-NCBI Database Cross References||http://bovinegenome.org/?q=node/65
			Gene expression||http://bovinegenome.org/?q=node/64

	'dataProcesses' has been modified:
		Before:
			blast
			Apollo annotation tool
			UMD 3.1 Downloads
			Btau_4.6.1 Downloads
			JBrowse
		After:
			blast
			Apollo annotation tool
			ARS-UCD1.2 Downloads
			UMD 3.1 Downloads
			ARC-UCD1.2 JBrowse
			UMD3.1 JBrowse
		Added:
			ARS-UCD1.2 Downloads
			ARC-UCD1.2 JBrowse
			UMD3.1 JBrowse
		Removed:
			Btau_4.6.1 Downloads
			JBrowse

Edits to 'https://fairsharing.org/bsg-d001122' by 'The FAIRsharing Team' at 17:05, 29 Aug 2018 (approved):

	'contactORCID' has been modified:
		Before: https://orcid.org/0000-0002-4248-7713
		After: 0000-0002-4248-7713

Support

General

support email

bovinegenome@gmail.com

Additional Information

Contact

Christine G. Elsik ORCID

Tools

BovineMine

http://128.206.116.13:8080/bovinemine/begin.do

v1.6

Access / Retrieve Data

Conditions of Use

Data Curation

Apollo annotation tool

https://bovinegenome.elsiklab.missouri.edu/annotator_registration

Data Access

blast	http://128.206.116.8/bgd-sequenceserver/
ARS-UCD1.2 Downloads	https://bovinegenome.elsiklab.missouri.edu/downloads/ARS-UCD1.2
UMD 3.1 Downloads	https://bovinegenome.elsiklab.missouri.edu/downloads/UMD_3.1
ARC-UCD1.2 JBrowse	http://128.206.116.5:8080/apollo-lsaa/21/jbrowse/
UMD3.1 JBrowse	http://genomes.missouri.edu/apollo-lsaa/20/jbrowse/index.html

Publications

Bovine Genome Database: new tools for gleaning function from the Bos taurus genome.

Elsik CG,Unni DR,Diesh CM,Tayal A,Emery ML,Nguyen HN,Hagen DE
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Funds

European Union's Seventh Framework Programme for research, technological development and demonstration (Government body)
USDA National Institute of Food and Agriculture (Government body)

Grant Number(s)

2007-35616-17882 (USDA National Institute of Food and Agriculture)
2010-65205-20407 (USDA National Institute of Food and Agriculture)
2010-65205-20647 (USDA National Institute of Food and Agriculture)
613689 (European Union's Seventh Framework Programme for research, technological development and demonstration)

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