Edits to 'https://fairsharing.org/FAIRsharing.LYsiMd' by 'The FAIRsharing Team' at 10:51, 29 Mar 2021 (approved):
'supportLinks' has been modified:
Before:
email|ccms-web@cs.ucsd.edu
help|https://massive.ucsd.edu/ProteoSAFe/help.jsp
help|https://massive.ucsd.edu/ProteoSAFe/demo_2.jsp
After:
email|ccms-web@cs.ucsd.edu
help|https://massive.ucsd.edu/ProteoSAFe/help.jsp
help|https://massive.ucsd.edu/ProteoSAFe/demo_2.jsp
online documentation|https://ccms-ucsd.github.io/MassIVEDocumentation
Added:
online documentation|https://ccms-ucsd.github.io/MassIVEDocumentation
Removed:
'accessPoints' has been modified:
Before:
After:
REST|https://ccms-ucsd.github.io/MassIVEDocumentation/#api/|API Documentation
Added:
REST|https://ccms-ucsd.github.io/MassIVEDocumentation/#api/|API Documentation
Removed:
'tools' has been modified:
Before:
Reanalyze Spectra||http://proteomics.ucsd.edu/service/massive/documentation/reanalyze-spectra/
Protein Explorer (beta)||https://massive.ucsd.edu/ProteoSAFe/protein_explorer_splash.jsp
Results Comparison||http://proteomics2.ucsd.edu/ProteoSAFe/index.jsp?params=%7B%22workflow%22:%22SERVERSIDE_RESULTS_COMPARISON_INPUT_INTEGRATED%22,%22library_on_server%22:%22d.speclibs;%22%7D
After:
Added:
Removed:
Reanalyze Spectra||http://proteomics.ucsd.edu/service/massive/documentation/reanalyze-spectra/
Protein Explorer (beta)||https://massive.ucsd.edu/ProteoSAFe/protein_explorer_splash.jsp
Results Comparison||http://proteomics2.ucsd.edu/ProteoSAFe/index.jsp?params=%7B%22workflow%22:%22SERVERSIDE_RESULTS_COMPARISON_INPUT_INTEGRATED%22,%22library_on_server%22:%22d.speclibs;%22%7D
'dataProcesses' has been modified:
Before:
Submit Data, data curation, http://proteomics.ucsd.edu/service/massive/documentation/submit-data/
Browse Data, data access, https://massive.ucsd.edu/ProteoSAFe/datasets.jsp#%7B%22query%22%3A%7B%7D%2C%22table_sort_history%22%3A%22createdMillis_dsc%22%7D
Submit Reanalyses, data curation, http://proteomics.ucsd.edu/service/massive/documentation/share-reanalyses/
After:
Submit Data, data curation, http://proteomics.ucsd.edu/service/massive/documentation/submit-data/
Browse Data, data access, https://massive.ucsd.edu/ProteoSAFe/datasets.jsp#%7B%22query%22%3A%7B%7D%2C%22table_sort_history%22%3A%22createdMillis_dsc%22%7D
Submit Reanalyses, data curation, http://proteomics.ucsd.edu/service/massive/documentation/share-reanalyses/
Search, data access, https://massive.ucsd.edu/ProteoSAFe/massive_search.jsp
Reanalyse Data, data access, https://ccms-ucsd.github.io/MassIVEDocumentation/reanalyze_spectra/
MassIVE Knowledgebase, data access, https://massive.ucsd.edu/ProteoSAFe/static/massive-kb-libraries.jsp
Protein Explorer, data access, https://massive.ucsd.edu/ProteoSAFe/protein_explorer_splash.jsp
MassIVE.Quant, data access, https://massive.ucsd.edu/ProteoSAFe/static/massive-quant.jsp
CoronaMassKB, data access, https://massive.ucsd.edu/ProteoSAFe/static/corona-mass-kb.jsp
Added:
Search, data access, https://massive.ucsd.edu/ProteoSAFe/massive_search.jsp
Reanalyse Data, data access, https://ccms-ucsd.github.io/MassIVEDocumentation/reanalyze_spectra/
MassIVE Knowledgebase, data access, https://massive.ucsd.edu/ProteoSAFe/static/massive-kb-libraries.jsp
Protein Explorer, data access, https://massive.ucsd.edu/ProteoSAFe/protein_explorer_splash.jsp
MassIVE.Quant, data access, https://massive.ucsd.edu/ProteoSAFe/static/massive-quant.jsp
CoronaMassKB, data access, https://massive.ucsd.edu/ProteoSAFe/static/corona-mass-kb.jsp
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.LYsiMd' by 'The FAIRsharing Team' at 10:46, 29 Mar 2021 (approved):
'onto_disciplines' has been modified:
Before:
Life Science
Metabolomics
Proteomics
After:
Metabolomics
Proteomics
Transcriptomics
Added:
Transcriptomics
Removed:
Life Science
'dataProcesses' has been modified:
Before:
Deposition Documentation, data access, http://proteomics.ucsd.edu/service/massive/documentation/submit-data/
Browse Data, data access, https://massive.ucsd.edu/ProteoSAFe/datasets.jsp#%7B%22query%22%3A%7B%7D%2C%22table_sort_history%22%3A%22createdMillis_dsc%22%7D
Share / Upload Results, data curation, http://proteomics.ucsd.edu/service/massive/documentation/share-reanalyses/
After:
Submit Data, data curation, http://proteomics.ucsd.edu/service/massive/documentation/submit-data/
Browse Data, data access, https://massive.ucsd.edu/ProteoSAFe/datasets.jsp#%7B%22query%22%3A%7B%7D%2C%22table_sort_history%22%3A%22createdMillis_dsc%22%7D
Submit Reanalyses, data curation, http://proteomics.ucsd.edu/service/massive/documentation/share-reanalyses/
Added:
Submit Data, data curation, http://proteomics.ucsd.edu/service/massive/documentation/submit-data/
Submit Reanalyses, data curation, http://proteomics.ucsd.edu/service/massive/documentation/share-reanalyses/
Removed:
Deposition Documentation, data access, http://proteomics.ucsd.edu/service/massive/documentation/submit-data/
Share / Upload Results, data curation, http://proteomics.ucsd.edu/service/massive/documentation/share-reanalyses/
'homepage' has been modified:
Before: https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp
After: https://massive.ucsd.edu
'publications' has been modified:
Before:
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.|Deutsch EW,Csordas A,Sun Z,Jarnuczak A,Perez-Riverol Y,Ternent T,Campbell DS,Bernal-Llinares M,Okuda S,Kawano S,Moritz RL,Carver JJ,Wang M,Ishihama Y,Bandeira N,Hermjakob H,Vizcaino JA|Nucleic Acids Res|2016
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.|Wang M,Carver JJ,Phelan VV,Sanchez LM,Garg N,Peng Y,Nguyen DD,Watrous J,Kapono CA,Luzzatto-Knaan T,Porto C,Bouslimani A,Melnik AV,Meehan MJ,Liu WT,Crusemann M,Boudreau PD,Esquenazi E,Sandoval-Calderon M,Kersten RD,Pace LA,Quinn RA,Duncan KR,Hsu CC,Floros DJ,Gavilan RG,Kleigrewe K,Northen T,Dutton RJ,Parrot D,Carlson EE,Aigle B,Michelsen CF,Jelsbak L,Sohlenkamp C,Pevzner P,Edlund A,McLean J,Piel J,Murphy BT,Gerwick L,Liaw CC,Yang YL,Humpf HU,Maansson M,Keyzers RA,Sims AC,Johnson AR,Sidebottom AM,Sedio BE,Klitgaard A,Larson CB,P CAB,Torres-Mendoza D,Gonzalez DJ,Silva DB,Marques LM,Demarque DP,Pociute E,O'Neill EC,Briand E,Helfrich EJN,Granatosky EA,Glukhov E,Ryffel F,Houson H,Mohimani H,Kharbush JJ,Zeng Y,Vorholt JA,Kurita KL,Charusanti P,McPhail KL,Nielsen KF,Vuong L,Elfeki M,Traxler MF,Engene N,Koyama N,Vining OB,Baric R,Silva RR,Mascuch SJ,Tomasi S,Jenkins S,Macherla V,Hoffman T,Agarwal V,Williams PG,Dai J,Neupane R,Gurr J,Rodriguez AMC,Lamsa A,Zhang C,Dorrestein K,Duggan BM,Almaliti J,Allard PM,Phapale P,Nothias LF,Alexandrov T,Litaudon M,Wolfender JL,Kyle JE,Metz TO,Peryea T,Nguyen DT,VanLeer D,Shinn P,Jadhav A,Muller R,Waters KM,Shi W,Liu X,Zhang L,Knight R,Jensen PR,Palsson BO,Pogliano K,Linington RG,Gutierrez M,Lopes NP,Gerwick WH,Moore BS,Dorrestein PC,Bandeira N|Nat Biotechnol|2016
After:
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.|Deutsch EW,Csordas A,Sun Z,Jarnuczak A,Perez-Riverol Y,Ternent T,Campbell DS,Bernal-Llinares M,Okuda S,Kawano S,Moritz RL,Carver JJ,Wang M,Ishihama Y,Bandeira N,Hermjakob H,Vizcaino JA|Nucleic Acids Res|2016
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.|Wang M,Carver JJ,Phelan VV et al.|Nat Biotechnol|2016
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.|Choi M,Carver J,Chiva C,Tzouros M,Huang T,Tsai TH,Pullman B,Bernhardt OM,Huttenhain R,Teo GC,Perez-Riverol Y,Muntel J,Muller M,Goetze S,Pavlou M,Verschueren E,Wollscheid B,Nesvizhskii AI,Reiter L,Dunkley T,Sabido E,Bandeira N,Vitek O|Nat Methods|2020
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.|Deutsch EW,Bandeira N,Sharma V,Perez-Riverol Y,Carver JJ,Kundu DJ,Garcia-Seisdedos D,Jarnuczak AF,Hewapathirana S,Pullman BS,Wertz J,Sun Z,Kawano S,Okuda S,Watanabe Y,Hermjakob H,MacLean B,MacCoss MJ,Zhu Y,Ishihama Y,Vizcaino JA|Nucleic Acids Res|2019
Added:
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.|Wang M,Carver JJ,Phelan VV et al.|Nat Biotechnol|2016
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.|Choi M,Carver J,Chiva C,Tzouros M,Huang T,Tsai TH,Pullman B,Bernhardt OM,Huttenhain R,Teo GC,Perez-Riverol Y,Muntel J,Muller M,Goetze S,Pavlou M,Verschueren E,Wollscheid B,Nesvizhskii AI,Reiter L,Dunkley T,Sabido E,Bandeira N,Vitek O|Nat Methods|2020
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.|Deutsch EW,Bandeira N,Sharma V,Perez-Riverol Y,Carver JJ,Kundu DJ,Garcia-Seisdedos D,Jarnuczak AF,Hewapathirana S,Pullman BS,Wertz J,Sun Z,Kawano S,Okuda S,Watanabe Y,Hermjakob H,MacLean B,MacCoss MJ,Zhu Y,Ishihama Y,Vizcaino JA|Nucleic Acids Res|2019
Removed:
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.|Wang M,Carver JJ,Phelan VV,Sanchez LM,Garg N,Peng Y,Nguyen DD,Watrous J,Kapono CA,Luzzatto-Knaan T,Porto C,Bouslimani A,Melnik AV,Meehan MJ,Liu WT,Crusemann M,Boudreau PD,Esquenazi E,Sandoval-Calderon M,Kersten RD,Pace LA,Quinn RA,Duncan KR,Hsu CC,Floros DJ,Gavilan RG,Kleigrewe K,Northen T,Dutton RJ,Parrot D,Carlson EE,Aigle B,Michelsen CF,Jelsbak L,Sohlenkamp C,Pevzner P,Edlund A,McLean J,Piel J,Murphy BT,Gerwick L,Liaw CC,Yang YL,Humpf HU,Maansson M,Keyzers RA,Sims AC,Johnson AR,Sidebottom AM,Sedio BE,Klitgaard A,Larson CB,P CAB,Torres-Mendoza D,Gonzalez DJ,Silva DB,Marques LM,Demarque DP,Pociute E,O'Neill EC,Briand E,Helfrich EJN,Granatosky EA,Glukhov E,Ryffel F,Houson H,Mohimani H,Kharbush JJ,Zeng Y,Vorholt JA,Kurita KL,Charusanti P,McPhail KL,Nielsen KF,Vuong L,Elfeki M,Traxler MF,Engene N,Koyama N,Vining OB,Baric R,Silva RR,Mascuch SJ,Tomasi S,Jenkins S,Macherla V,Hoffman T,Agarwal V,Williams PG,Dai J,Neupane R,Gurr J,Rodriguez AMC,Lamsa A,Zhang C,Dorrestein K,Duggan BM,Almaliti J,Allard PM,Phapale P,Nothias LF,Alexandrov T,Litaudon M,Wolfender JL,Kyle JE,Metz TO,Peryea T,Nguyen DT,VanLeer D,Shinn P,Jadhav A,Muller R,Waters KM,Shi W,Liu X,Zhang L,Knight R,Jensen PR,Palsson BO,Pogliano K,Linington RG,Gutierrez M,Lopes NP,Gerwick WH,Moore BS,Dorrestein PC,Bandeira N|Nat Biotechnol|2016
'onto_domains' has been modified:
Before:
Mass spectrometry spectra
Natural Product
After:
Gene expression data
Mass spectrometry spectra
protocol
study design
Added:
Gene expression data
protocol
study design
Removed:
Natural Product
Edits to 'https://fairsharing.org/FAIRsharing.LYsiMd' by 'The FAIRsharing Team' at 14:21, 16 Oct 2018 (approved):
'organizations' has been modified:
Before:
NIGMS|http://www.nigms.nih.gov|Funds
After:
NIGMS|http://www.nigms.nih.gov|Funds
Center for Computational Mass Spectrometry, University of California San Diego, United States|http://proteomics.ucsd.edu/|Maintains
Added:
Center for Computational Mass Spectrometry, University of California San Diego, United States|http://proteomics.ucsd.edu/|Maintains
Removed:
'related_databases' has been modified:
Before:
PRoteomics IDEntifications database
Japan Proteome Standard Repository
After:
PRoteomics IDEntifications database
ProteomeXchange
Japan Proteome Standard Repository
Added:
ProteomeXchange
Removed:
'tools' has been modified:
Before:
Reanalyze Spectra||http://proteomics.ucsd.edu/service/massive/documentation/reanalyze-spectra/
After:
Reanalyze Spectra||http://proteomics.ucsd.edu/service/massive/documentation/reanalyze-spectra/
Protein Explorer (beta)||https://massive.ucsd.edu/ProteoSAFe/protein_explorer_splash.jsp
Results Comparison||http://proteomics2.ucsd.edu/ProteoSAFe/index.jsp?params=%7B%22workflow%22:%22SERVERSIDE_RESULTS_COMPARISON_INPUT_INTEGRATED%22,%22library_on_server%22:%22d.speclibs;%22%7D
Added:
Protein Explorer (beta)||https://massive.ucsd.edu/ProteoSAFe/protein_explorer_splash.jsp
Results Comparison||http://proteomics2.ucsd.edu/ProteoSAFe/index.jsp?params=%7B%22workflow%22:%22SERVERSIDE_RESULTS_COMPARISON_INPUT_INTEGRATED%22,%22library_on_server%22:%22d.speclibs;%22%7D
Removed:
'dataProcesses' has been modified:
Before:
Deposition Documentation
Browse Data
After:
Deposition Documentation
Browse Data
Share / Upload Results
Added:
Share / Upload Results
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.LYsiMd' by 'The FAIRsharing Team' at 11:03, 06 Sep 2018 (approved):
'domains' has been modified:
Before:
Mass spectrometry spectra
Metabolomics
Natural products
Proteomics
After:
Life Science
Mass spectrometry spectra
Metabolomics
Natural products
Proteomics
Added:
Life Science
Removed:
'supportLinks' has been modified:
Before:
After:
email|ccms-web@cs.ucsd.edu
help|https://massive.ucsd.edu/ProteoSAFe/help.jsp
help|https://massive.ucsd.edu/ProteoSAFe/demo_2.jsp
Added:
email|ccms-web@cs.ucsd.edu
help|https://massive.ucsd.edu/ProteoSAFe/help.jsp
help|https://massive.ucsd.edu/ProteoSAFe/demo_2.jsp
Removed:
'taxonomies' has been modified:
Before:
After:
All
Added:
All
Removed:
'tools' has been modified:
Before:
After:
Reanalyze Spectra||http://proteomics.ucsd.edu/service/massive/documentation/reanalyze-spectra/
Added:
Reanalyze Spectra||http://proteomics.ucsd.edu/service/massive/documentation/reanalyze-spectra/
Removed:
'dataProcesses' has been modified:
Before:
Deposition Documentation
After:
Deposition Documentation
Browse Data
Added:
Browse Data
Removed: