Genome Properties

General Information

Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome. This is a reimplementation at EMBL-EBI of a resource previously hosted at JCVI.

Homepage https://www.ebi.ac.uk/interpro/genomeproperties

Countries that developed this resource European Union , United Kingdom , United States

Created in 2005

Taxonomic range

All

Knowledge Domains

User-defined Tags

protein homology

proteome annotation

How to cite this record FAIRsharing.org: Genome Properties; Genome Properties; DOI: https://doi.org/10.25504/FAIRsharing.A0ozDj; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: May 22 2019 7:33 a.m.

Publication for citation Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes. Richardson LJ,Rawlings ND,Salazar GA,Almeida A,Haft DR,Ducq G,Sutton GG,Finn RD; Nucleic Acids Res ; 2018; 10.1093/nar/gky1013;

This record is maintained by GenProp

Record added: Oct. 30, 2018, 2:18 p.m.
Record updated: Nov. 6, 2018, 1:34 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.A0ozDj' by 'The FAIRsharing Team' at 13:34, 06 Nov 2018 (approved):

	'shortname' has been modified:
		Before:  
		After: Genome Properties

Edits to 'https://fairsharing.org/FAIRsharing.A0ozDj' by 'The FAIRsharing Team' at 13:11, 06 Nov 2018 (approved):

	'domains' has been modified:
		Before:
			Genome annotation
			Pathway or network prediction
			Proteome
			Sequence annotation
			protein complex
			protein homology
			proteome annotation
		After:
			Genome annotation
			Homologous
			Pathway or network prediction
			Proteome
			Sequence annotation
			protein complex
			protein homology
			proteome annotation
		Added:
			Homologous
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.A0ozDj' by 'The FAIRsharing Team' at 13:03, 06 Nov 2018 (approved):

	'domains' has been modified:
		Before:
			Genome annotation
			Pathway or network prediction
			protein complex
			protein homology
			proteome annotation
		After:
			Genome annotation
			Pathway or network prediction
			Proteome
			Sequence annotation
			protein complex
			protein homology
			proteome annotation
		Added:
			Proteome
			Sequence annotation
		Removed:

	'licences' has been modified:
		Before:
		After:
			EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
		Added:
			EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
		Removed:

	'supportLinks' has been modified:
		Before:
			email|GenProp@ebi.ac.uk
			training|https://www.ebi.ac.uk/training/online/course/genome-properties-quick-tour
			training|https://www.ebi.ac.uk/training/online/course/genome-properties-tutorial
		After:
			email|GenProp@ebi.ac.uk
			online documentation|https://www.ebi.ac.uk/interpro/genomeproperties/#about
			training|https://www.ebi.ac.uk/training/online/course/genome-properties-quick-tour
			training|https://www.ebi.ac.uk/training/online/course/genome-properties-tutorial
		Added:
			online documentation|https://www.ebi.ac.uk/interpro/genomeproperties/#about
		Removed:

	'dataProcesses' has been modified:
		Before:
		After:
			Browse Repository
			Repository Viewer
		Added:
			Browse Repository
			Repository Viewer
		Removed:

	'organizations' has been modified:
		Before:
		After:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom|https://www.ebi.ac.uk/|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom|https://www.ebi.ac.uk/|Maintains
		Removed:

Support

General

support email	Genome properties helpdesk
online documentation	About Genome properties
training	Genome properties quick tour
training	Genome properties tutorial

Additional Information

Contact	Lorna Richardson ORCID
Identifiers.org	MIR:00000443

Tools

InterProScan

https://www.ebi.ac.uk/interpro/interproscan.html

Access / Retrieve Data

Conditions of Use

Applies to: Data use

EBI Terms of Use

Data Access

Browse Repository	https://www.ebi.ac.uk/interpro/genomeproperties/#hierarchy
Repository Viewer	https://www.ebi.ac.uk/interpro/genomeproperties/#viewer

Publications

Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes.

Richardson LJ,Rawlings ND,Salazar GA,Almeida A,Haft DR,Ducq G,Sutton GG,Finn RD
Nucleic Acids Res 2018

View Paper (PubMed) View Publication

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.

Haft DH,Selengut JD,Brinkac LM,Zafar N,White O
Bioinformatics 2004

View Paper (PubMed) View Publication

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes.

Selengut JD,Haft DH,Davidsen T,Ganapathy A,Gwinn-Giglio M,Nelson WC,Richter AR,White O
Nucleic Acids Res 2006

View Paper (PubMed) View Publication

TIGRFAMs and Genome Properties in 2013.

Haft DH,Selengut JD,Richter RA,Harkins D,Basu MK,Beck E
Nucleic Acids Res 2012

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by GenProp

Maintains

European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Research institute) Lead

Genome Properties

We need your help!

Developed by

Contact Us

About FAIRsharing